ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet02b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475910.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
2gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
3gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
6ref|NM_192374.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
8dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
9ref|NM_192393.1| Oryza sativa (japonica cultivar-group), predic... 54 5e-04
10dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
11dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
12ref|XM_550329.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.028
13ref|XM_464464.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.028
14gb|AY299404.1| Oryza sativa (indica cultivar-group) soluble star... 48 0.028
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
17dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
18dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
19dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.028
20dbj|AK109458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.028
21dbj|AK108729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.028
22gb|AF165890.1|AF165890 Oryza sativa subsp. japonica soluble star... 48 0.028
23dbj|D16202.1|RICSSS Oryza sativa mRNA for soluble starch synthas... 48 0.028
24dbj|D38221.1|RICE1 Rice gene for soluble starch synthase (SSS1),... 48 0.028
25dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
26dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.11
27ref|XM_479598.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.44
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
29dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
30dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.44
31gb|AC007399.1|AC007399 Arabidopsis thaliana BAC F14I23 from chro... 44 0.44
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 44 0.44
33ref|XM_480356.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
34ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.7
35ref|XM_471605.1| Oryza sativa (japonica cultivar-group), predic... 42 1.7
36emb|CR703753.2|CNS0G5YT Tetraodon nigroviridis full-length cDNA 42 1.7
37emb|CR702914.2|CNS0G5BI Tetraodon nigroviridis full-length cDNA 42 1.7
38gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 1.7
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
40dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
41dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
42dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
43dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
44ref|NM_208603.1| Eremothecium gossypii ACL154Wp (ACL154W), mRNA 42 1.7
45emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4,... 42 1.7
46ref|XM_636869.1| Dictyostelium discoideum hypothetical protein (... 40 6.8
47gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
48ref|XM_418180.1| PREDICTED: Gallus gallus similar to glycoprotei... 40 6.8
49gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.8
50gb|AY132312.1| Anaplasma marginale strain Virginia transcription... 40 6.8
51gb|AF540588.1| Anaplasma marginale clone peak2 7G major surface ... 40 6.8
52gb|AF540587.1| Anaplasma marginale clone peak2 8E major surface ... 40 6.8
53gb|AY212800.1| Uncultured bacterium clone XIVA3 Uvs061 (uvs061),... 40 6.8
54gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genom... 40 6.8
55gb|AF402277.1| Anaplasma marginale expression site variant Block... 40 6.8
56emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segme... 40 6.8
57dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.8
58gb|AF354486.1|AF354486 Anaplasma marginale clone 4327 major surf... 40 6.8
59gb|AF354471.1|AF354471 Anaplasma marginale clone 1C7 major surfa... 40 6.8
60gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.8
61dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
62gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 40 6.8
63gb|AY109961.1| Zea mays CL7280_1 mRNA sequence 40 6.8 
>ref|XM_475910.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1224

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtcg 242
           |||||||||||||||| ||   |||||||||||| || ||||| |||||||| ||| |||
Sbjct: 38  ggtggcgcgagctccatgggcaggactcgtggaatggcctcctcgacccgctcgacctcg 97

                  
Query: 243 acctccg 249
           |||||||
Sbjct: 98  acctccg 104
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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
              complete sequence
          Length = 187034

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                          
Query: 183    ggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtcg 242
              |||||||||||||||| ||   |||||||||||| || ||||| |||||||| ||| |||
Sbjct: 167061 ggtggcgcgagctccatgggcaggactcgtggaatggcctcctcgacccgctcgacctcg 167002

                     
Query: 243    acctccg 249
              |||||||
Sbjct: 167001 acctccg 166995
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>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08,
             complete sequence
          Length = 119500

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                         
Query: 183   ggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtcg 242
             |||||||||||||||| ||   |||||||||||| || ||||| |||||||| ||| |||
Sbjct: 17743 ggtggcgcgagctccatgggcaggactcgtggaatggcctcctcgacccgctcgacctcg 17684

                    
Query: 243   acctccg 249
             |||||||
Sbjct: 17683 acctccg 17677
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                            
Query: 183      ggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtcg 242
                |||||||||||||||| ||   |||||||||||| || ||||| |||||||| ||| |||
Sbjct: 28382819 ggtggcgcgagctccatgggcaggactcgtggaatggcctcctcgacccgctcgacctcg 28382760

                       
Query: 243      acctccg 249
                |||||||
Sbjct: 28382759 acctccg 28382753
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>dbj|AK106699.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E01, full
           insert sequence
          Length = 1526

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Plus

                                                                       
Query: 183 ggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtcg 242
           |||||||||||||||| ||   |||||||||||| || ||||| |||||||| ||| |||
Sbjct: 122 ggtggcgcgagctccatgggcaggactcgtggaatggcctcctcgacccgctcgacctcg 181

                  
Query: 243 acctccg 249
           |||||||
Sbjct: 182 acctccg 188
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>ref|NM_192374.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1212

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 227 gacccgctggacgtcgacctccgacgctccatcatcgcttacggcgag 274
           ||||||||||||||||||||||| |||| | ||||| | |||||||||
Sbjct: 55  gacccgctggacgtcgacctccgccgctgcctcatcacctacggcgag 102
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 227      gacccgctggacgtcgacctccgacgctccatcatcgcttacggcgag 274
                ||||||||||||||||||||||| |||| | ||||| | |||||||||
Sbjct: 26293506 gacccgctggacgtcgacctccgccgctgcctcatcacctacggcgag 26293553



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 132/167 (79%)
 Strand = Plus / Minus

                                                                            
Query: 182      cggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtc 241
                |||||| | ||||||||||||  ||||   |||||||| ||||| ||||| || |||| |
Sbjct: 26380135 cggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgcc 26380076

                                                                            
Query: 242      gacctccgacgctccatcatcgcttacggcgagcttgcgtcggccgcccacgacgggttc 301
                |||||||| |||  | ||||||  ||||||||||| |||  |||| || |||||| ||||
Sbjct: 26380075 gacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttc 26380016

                                                               
Query: 302      aacctcgagaagcggtcaccgcatgccggcttgtgcctgtatagccg 348
                | || ||||  | |||| ||||| ||||||  ||||| ||| |||||
Sbjct: 26380015 atccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccg 26379969
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>dbj|AP003792.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1159_D09
          Length = 147770

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 227    gacccgctggacgtcgacctccgacgctccatcatcgcttacggcgag 274
              ||||||||||||||||||||||| |||| | ||||| | |||||||||
Sbjct: 106187 gacccgctggacgtcgacctccgccgctgcctcatcacctacggcgag 106234
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>ref|NM_192393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1458

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 132/167 (79%)
 Strand = Plus / Plus

                                                                       
Query: 182 cggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtc 241
           |||||| | ||||||||||||  ||||   |||||||| ||||| ||||| || |||| |
Sbjct: 34  cggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgcc 93

                                                                       
Query: 242 gacctccgacgctccatcatcgcttacggcgagcttgcgtcggccgcccacgacgggttc 301
           |||||||| |||  | ||||||  ||||||||||| |||  |||| || |||||| ||||
Sbjct: 94  gacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttc 153

                                                          
Query: 302 aacctcgagaagcggtcaccgcatgccggcttgtgcctgtatagccg 348
           | || ||||  | |||| ||||| ||||||  ||||| ||| |||||
Sbjct: 154 atccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccg 200
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>dbj|AP003710.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0032K15
          Length = 126195

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 132/167 (79%)
 Strand = Plus / Minus

                                                                         
Query: 182   cggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtc 241
             |||||| | ||||||||||||  ||||   |||||||| ||||| ||||| || |||| |
Sbjct: 54000 cggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgcc 53941

                                                                         
Query: 242   gacctccgacgctccatcatcgcttacggcgagcttgcgtcggccgcccacgacgggttc 301
             |||||||| |||  | ||||||  ||||||||||| |||  |||| || |||||| ||||
Sbjct: 53940 gacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttc 53881

                                                            
Query: 302   aacctcgagaagcggtcaccgcatgccggcttgtgcctgtatagccg 348
             | || ||||  | |||| ||||| ||||||  ||||| ||| |||||
Sbjct: 53880 atccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccg 53834
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>dbj|AK063136.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G02, full
           insert sequence
          Length = 705

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 132/167 (79%)
 Strand = Plus / Plus

                                                                       
Query: 182 cggtggcgcgagctccacggctcggactcgtggaaggggctcctggacccgctggacgtc 241
           |||||| | ||||||||||||  ||||   |||||||| ||||| ||||| || |||| |
Sbjct: 161 cggtggagggagctccacggcgaggaccactggaagggcctcctcgaccctctcgacgcc 220

                                                                       
Query: 242 gacctccgacgctccatcatcgcttacggcgagcttgcgtcggccgcccacgacgggttc 301
           |||||||| |||  | ||||||  ||||||||||| |||  |||| || |||||| ||||
Sbjct: 221 gacctccggcgcagcgtcatcggctacggcgagctggcgcaggccaccaacgacgcgttc 280

                                                          
Query: 302 aacctcgagaagcggtcaccgcatgccggcttgtgcctgtatagccg 348
           | || ||||  | |||| ||||| ||||||  ||||| ||| |||||
Sbjct: 281 atccgcgaggcgtggtcgccgcacgccggcgcgtgccggtacagccg 327
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>ref|XM_550329.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2623

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 124 cgcgcccacgccgtcgccagcgccggcgccga 155
           ||||||||||| |||||| |||||||||||||
Sbjct: 405 cgcgcccacgcagtcgccggcgccggcgccga 436
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>ref|XM_464464.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 976

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 126 cgcccacgccgtcgccagcgccggcgccgaag 157
           ||||||||||| |||| |||||||||||||||
Sbjct: 730 cgcccacgccggcgccggcgccggcgccgaag 761
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>gb|AY299404.1| Oryza sativa (indica cultivar-group) soluble starch synthase I
           precursor, mRNA, complete cds
          Length = 2547

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 124 cgcgcccacgccgtcgccagcgccggcgccga 155
           ||||||||||| |||||| |||||||||||||
Sbjct: 309 cgcgcccacgcagtcgccggcgccggcgccga 340
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 124     cgcgcccacgccgtcgccagcgccggcgccga 155
               ||||||||||| |||||| |||||||||||||
Sbjct: 3085396 cgcgcccacgcagtcgccggcgccggcgccga 3085365



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 128      cccacgccgtcgccagcgccggcgccg 154
                ||||||||| |||||||||||||||||
Sbjct: 23055932 cccacgccggcgccagcgccggcgccg 23055906
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 126     cgcccacgccgtcgccagcgccggcgccgaag 157
               ||||||||||| |||| |||||||||||||||
Sbjct: 5364696 cgcccacgccggcgccggcgccggcgccgaag 5364665
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>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1524_D08
          Length = 143046

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 126   cgcccacgccgtcgccagcgccggcgccgaag 157
             ||||||||||| |||| |||||||||||||||
Sbjct: 18277 cgcccacgccggcgccggcgccggcgccgaag 18246
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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 124   cgcgcccacgccgtcgccagcgccggcgccga 155
             ||||||||||| |||||| |||||||||||||
Sbjct: 39581 cgcgcccacgcagtcgccggcgccggcgccga 39550
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1225_F07
          Length = 142772

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 126   cgcccacgccgtcgccagcgccggcgccgaag 157
             ||||||||||| |||| |||||||||||||||
Sbjct: 90999 cgcccacgccggcgccggcgccggcgccgaag 90968
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>dbj|AK109458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-C03, full
           insert sequence
          Length = 2623

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 124 cgcgcccacgccgtcgccagcgccggcgccga 155
           ||||||||||| |||||| |||||||||||||
Sbjct: 405 cgcgcccacgcagtcgccggcgccggcgccga 436
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>dbj|AK108729.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D01, full
           insert sequence
          Length = 976

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 126 cgcccacgccgtcgccagcgccggcgccgaag 157
           ||||||||||| |||| |||||||||||||||
Sbjct: 730 cgcccacgccggcgccggcgccggcgccgaag 761
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>gb|AF165890.1|AF165890 Oryza sativa subsp. japonica soluble starch synthase mRNA, complete
           cds
          Length = 2585

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 124 cgcgcccacgccgtcgccagcgccggcgccga 155
           ||||||||||| |||||| |||||||||||||
Sbjct: 351 cgcgcccacgcagtcgccggcgccggcgccga 382
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>dbj|D16202.1|RICSSS Oryza sativa mRNA for soluble starch synthase, complete cds
          Length = 2533

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 124 cgcgcccacgccgtcgccagcgccggcgccga 155
           ||||||||||| |||||| |||||||||||||
Sbjct: 326 cgcgcccacgcagtcgccggcgccggcgccga 357
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>dbj|D38221.1|RICE1 Rice gene for soluble starch synthase (SSS1), complete cds (exon1-15)
          Length = 8900

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 124  cgcgcccacgccgtcgccagcgccggcgccga 155
            ||||||||||| |||||| |||||||||||||
Sbjct: 1366 cgcgcccacgcagtcgccggcgccggcgccga 1397
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>dbj|AP004571.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0652A05
          Length = 150455

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 128    cccacgccgtcgccagcgccggcgccg 154
              ||||||||| |||||||||||||||||
Sbjct: 122476 cccacgccggcgccagcgccggcgccg 122450
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>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0417D05
          Length = 165752

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 128  cccacgccgtcgccagcgccggcgccg 154
            ||||||||| |||||||||||||||||
Sbjct: 6580 cccacgccggcgccagcgccggcgccg 6554
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>ref|XM_479598.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 192

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 133 gccgtcgccagcgccggcgccg 154
           ||||||||||||||||||||||
Sbjct: 72  gccgtcgccagcgccggcgccg 51
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 133      gccgtcgccagcgccggcgccg 154
                ||||||||||||||||||||||
Sbjct: 29129420 gccgtcgccagcgccggcgccg 29129399
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>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   gccgtcgccagcgccggcgccg 154
             ||||||||||||||||||||||
Sbjct: 64538 gccgtcgccagcgccggcgccg 64517
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   gccgtcgccagcgccggcgccg 154
             ||||||||||||||||||||||
Sbjct: 77377 gccgtcgccagcgccggcgccg 77356
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>gb|AC007399.1|AC007399 Arabidopsis thaliana BAC F14I23 from chromosome V near 69 cM, complete
             sequence
          Length = 105223

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 431   tcaacggtgtcgaggttggcga 452
             ||||||||||||||||||||||
Sbjct: 35872 tcaacggtgtcgaggttggcga 35893
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 133     gccgtcgccagcgccggcgccg 154
               ||||||||||||||||||||||
Sbjct: 2767988 gccgtcgccagcgccggcgccg 2767967
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>ref|XM_480356.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 126  cgcccacgccgtcgccagcgccggcgccg 154
            |||||||| ||||||| ||||||||||||
Sbjct: 1570 cgcccacgacgtcgccggcgccggcgccg 1598
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>ref|XM_507147.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1120_C08.22 mRNA
          Length = 2059

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 126  cgcccacgccgtcgccagcgccggcgccg 154
            |||||||| ||||||| ||||||||||||
Sbjct: 1570 cgcccacgacgtcgccggcgccggcgccg 1598
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>ref|XM_471605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 579

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 128 cccacgccgtcgccagcgccggcgc 152
           ||||||||| |||||||||||||||
Sbjct: 355 cccacgccgccgccagcgccggcgc 331
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>emb|CR703753.2|CNS0G5YT Tetraodon nigroviridis full-length cDNA
          Length = 1117

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 129 ccacgccgtcgccagcgccggcgcc 153
           ||||||||||||| |||||||||||
Sbjct: 588 ccacgccgtcgccggcgccggcgcc 612
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>emb|CR702914.2|CNS0G5BI Tetraodon nigroviridis full-length cDNA
          Length = 1135

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 129 ccacgccgtcgccagcgccggcgcc 153
           ||||||||||||| |||||||||||
Sbjct: 599 ccacgccgtcgccggcgccggcgcc 623
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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
             complete sequence
          Length = 907057

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 137   tcgccagcgccggcgccgaag 157
             |||||||||||||||||||||
Sbjct: 84608 tcgccagcgccggcgccgaag 84588
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 128      cccacgccgtcgccagcgccggcgc 152
                ||||||||| |||||||||||||||
Sbjct: 12638597 cccacgccgccgccagcgccggcgc 12638573
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 126     cgcccacgccgtcgccagcgccggcgccg 154
               |||||||| ||||||| ||||||||||||
Sbjct: 4576656 cgcccacgacgtcgccggcgccggcgccg 4576684
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>dbj|AP003878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1120_C08
          Length = 150300

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 126    cgcccacgccgtcgccagcgccggcgccg 154
              |||||||| ||||||| ||||||||||||
Sbjct: 100504 cgcccacgacgtcgccggcgccggcgccg 100532
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>dbj|AK072269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008O22, full
            insert sequence
          Length = 1743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 126  cgcccacgccgtcgccagcgccggcgccg 154
            |||||||| ||||||| ||||||||||||
Sbjct: 1570 cgcccacgacgtcgccggcgccggcgccg 1598
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>dbj|AK070877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065C06, full
            insert sequence
          Length = 2059

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 126  cgcccacgccgtcgccagcgccggcgccg 154
            |||||||| ||||||| ||||||||||||
Sbjct: 1570 cgcccacgacgtcgccggcgccggcgccg 1598
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>ref|NM_208603.1| Eremothecium gossypii ACL154Wp (ACL154W), mRNA
          Length = 960

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 tcgccagcgccggcgccgaag 157
           |||||||||||||||||||||
Sbjct: 647 tcgccagcgccggcgccgaag 627
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>emb|AL731633.2|OSJN00280 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0096E05,
             complete sequence
          Length = 129908

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 128   cccacgccgtcgccagcgccggcgc 152
             ||||||||| |||||||||||||||
Sbjct: 53583 cccacgccgccgccagcgccggcgc 53559
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>ref|XM_636869.1| Dictyostelium discoideum hypothetical protein (DDB0206190), partial
           mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 839 acactaccagtaacggcacc 820
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>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17
              map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    cacgccgtcgccagcgccgg 149
              ||||||||||||||||||||
Sbjct: 120980 cacgccgtcgccagcgccgg 120961
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>ref|XM_418180.1| PREDICTED: Gallus gallus similar to glycoprotein Ib (LOC420059),
           mRNA
          Length = 2088

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 351 accgcctgctgtccgcctccacgg 374
           ||||||||||||||| ||||||||
Sbjct: 230 accgcctgctgtccgtctccacgg 253
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 130      cacgccgtcgccagcgccgg 149
                ||||||||||||||||||||
Sbjct: 25004535 cacgccgtcgccagcgccgg 25004516
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>gb|AY132312.1| Anaplasma marginale strain Virginia transcriptional regulator (tr1)
            gene, complete cds; and msp2 operon, complete sequence
          Length = 5661

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   acactaccagtaacggcacc 114
            ||||||||||||||||||||
Sbjct: 5162 acactaccagtaacggcacc 5181
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>gb|AF540588.1| Anaplasma marginale clone peak2 7G major surface protein 2 (msp2)
           gene, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 359 acactaccagtaacggcacc 378
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>gb|AF540587.1| Anaplasma marginale clone peak2 8E major surface protein 2 (msp2)
           gene, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 359 acactaccagtaacggcacc 378
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>gb|AY212800.1| Uncultured bacterium clone XIVA3 Uvs061 (uvs061), Uvs062 (uvs062),
             Uvs063 (uvs063), Uvs064 (uvs064), Uvs065 (uvs065), Uvs066
             (uvs066), Uvs067 (uvs067), Uvs068 (uvs068), Uvs069, ActP
             (actP), AguC (aguC), Uvs072 (uvs072), AguD (aguD), AguE
             (aguE), Uvs075 (uvs075), Uvs076 (uvs076), Uvs077 (uvs077),
             Uvs078 (uvs078), Uvs079 (uvs079), Uvs080 (uvs080), AguF
             (aguF), and Uvs082 (uvs082) genes, complete cds
          Length = 38120

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   gccgtcgccagcgccggcgc 152
             ||||||||||||||||||||
Sbjct: 14310 gccgtcgccagcgccggcgc 14329
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>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   cacgccgtcgccagcgccgg 149
             ||||||||||||||||||||
Sbjct: 36342 cacgccgtcgccagcgccgg 36323
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>gb|AF402277.1| Anaplasma marginale expression site variant Block 3 major surface
           protein 2 (msp2) gene, partial cds
          Length = 408

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 359 acactaccagtaacggcacc 378
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>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7
          Length = 349544

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    acaaggcgagaatgaacaacacac 98
             ||||||||| ||||||||||||||
Sbjct: 61492 acaaggcgacaatgaacaacacac 61469
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     cctggacccgctggacgtcg 242
               ||||||||||||||||||||
Sbjct: 3485148 cctggacccgctggacgtcg 3485167
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>gb|AF354486.1|AF354486 Anaplasma marginale clone 4327 major surface protein 2
           hypervariable region gene, partial cds
          Length = 396

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 209 acactaccagtaacggcacc 228
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>gb|AF354471.1|AF354471 Anaplasma marginale clone 1C7 major surface protein 2 hypervariable
           region gene, partial cds
          Length = 387

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  acactaccagtaacggcacc 114
           ||||||||||||||||||||
Sbjct: 200 acactaccagtaacggcacc 219
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     acgccgtcgccagcgccggcgccg 154
               ||||||||||||||||| ||||||
Sbjct: 2180036 acgccgtcgccagcgccagcgccg 2180059
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 130      cacgccgtcgccagcgccgg 149
                ||||||||||||||||||||
Sbjct: 25095852 cacgccgtcgccagcgccgg 25095833
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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   cctggacccgctggacgtcg 242
             ||||||||||||||||||||
Sbjct: 64089 cctggacccgctggacgtcg 64108
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>gb|AY109961.1| Zea mays CL7280_1 mRNA sequence
          Length = 912

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 gccgtcgccagcgccggcgc 152
           ||||||||||||||||||||
Sbjct: 5   gccgtcgccagcgccggcgc 24


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,467,123
Number of Sequences: 3902068
Number of extensions: 2467123
Number of successful extensions: 51173
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50447
Number of HSP's gapped (non-prelim): 726
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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