ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet02a03 |
|---|---|
| Clone Library Name | barley_pub |
>RPB5_SCHPO (Q09191) DNA-directed RNA polymerases II 24 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 210 Score = 32.7 bits (73), Expect = 0.54 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = +2 Query: 194 ILRHPAIPEHHHLRPQKRNQHLDRPRHLRHDELPRLQL 307 I H +P+H L P ++ + LDR + LR +LPR+QL Sbjct: 139 ITHHELVPKHILLSPDEKKELLDRYK-LRETQLPRIQL 175
>PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15) (Pectinase)| (Major pollen allergen Jun a 2) Length = 507 Score = 30.0 bits (66), Expect = 3.5 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +3 Query: 99 GPAEPHLSYKIHQHSSSYPQPRDFPSEQLYHAYFAIQRF 215 GP +PH S+K+ ++YP P + + +++ + + F Sbjct: 111 GPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDF 149
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 30.0 bits (66), Expect = 3.5 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 16/92 (17%) Frame = +3 Query: 237 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT---VTSVIFDGFGLCSPMQQDLVD- 404 P + +W G+D C T+++G C + +L +T I FG +Q+ ++ Sbjct: 338 PPRLAESWKGNDPC--TNWIGIACSNGNITVISLEKMELTGTISPEFGAIKSLQRIILGI 395 Query: 405 ------------ELPDLALFQASSNNFGGEVP 464 LP+L SSN G+VP Sbjct: 396 NNLTGMIPQELTTLPNLKTLDVSSNKLFGKVP 427
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +3 Query: 240 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 353 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>CHRA_PSEAE (P14285) Chromate transport protein| Length = 416 Score = 29.3 bits (64), Expect = 6.0 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -1 Query: 379 EHRPKPSKMTDVTVRLLACPCGAPQLKPR*LVVAQMSWPVQVLVTFLGSEVMVFWNRWMA 200 E +PSK TD T + P PQL R L ++W V + +V RW++ Sbjct: 6 EESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAWGGPVAQIDMLRRELVDEERWIS 65
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +2 Query: 179 AALPCILRHPAIPEHHHLRPQKRNQHLDRPRH 274 AALP HP HHH P + + H P H Sbjct: 999 AALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 6.0 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +3 Query: 243 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 365 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 28.9 bits (63), Expect = 7.8 Identities = 22/77 (28%), Positives = 33/77 (42%) Frame = +3 Query: 231 SDPKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTSVIFDGFGLCSPMQQDLVDEL 410 SDP S+W+ ++ +LG +C A SN V SV F L P ++ L Sbjct: 36 SDPAQSLSSWSDNNDVTPCKWLGVSCDA----TSN--VVSVDLSSFMLVGPF-PSILCHL 88 Query: 411 PDLALFQASSNNFGGEV 461 P L +N+ G + Sbjct: 89 PSLHSLSLYNNSINGSL 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,955,226 Number of Sequences: 219361 Number of extensions: 1472441 Number of successful extensions: 4261 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4251 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
