ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01g07 |
|---|---|
| Clone Library Name | barley_pub |
>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 32.7 bits (73), Expect = 0.41 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Frame = -2 Query: 439 STPYSMXTYTPATAPQYAP---SLHIFFSVSSSWRF-EISPLWRQSKASSATTLQAP--- 281 S P+ T A AP+ P ++H + +S + E +PLW + SS TT QAP Sbjct: 62 SHPFPRATAPTAQAPRTGPPRATVHRPLAATSPAQSPETTPLWATAGPSS-TTFQAPLGP 120 Query: 280 ---TAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 T P + ST + P ST PA + V + P T Sbjct: 121 SPTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTPRT 170
>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)| (Receptor-linked protein-tyrosine phosphatase 99A) (DPTP99A) Length = 1301 Score = 31.6 bits (70), Expect = 0.91 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = -2 Query: 310 ASSATTLQAPTAPILRKPSTVRLSSGLPRSM----------ATSTLFDPAASPAVGILPS 161 +SS+TT P+ P + P T++LSS P + A S + AS + G P+ Sbjct: 1125 SSSSTTPPTPSTPTPQPPQTIQLSSHSPSDLSHQISSTVANAASPVTPATASASAGATPT 1184 Query: 160 SRLAP 146 + + P Sbjct: 1185 TPMTP 1189
>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) Length = 727 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = -2 Query: 436 TPYSMXTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257 TP YTP+ AP Y PS ++ S + + SP + A S P P R P Sbjct: 430 TPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPP 489
>Y1614_METJA (Q59009) Hypothetical protein MJ1614| Length = 251 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = +3 Query: 168 RMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAED--AFD---CLHRG 332 R P + ++ + +D+G+ LN+ ++ FLKI A + ++ FD C+ +G Sbjct: 150 RNPDKEIIENLGELKITLDIGHSFLNKNIENFLKISDKIAHIHIHDNNGEFDEHLCIGKG 209 Query: 333 DISKRQLEETLKKM 374 I+ ++ LKK+ Sbjct: 210 KINFNNFKKDLKKI 223
>DXR_CHLTE (Q8KG43) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 382 Score = 30.4 bits (67), Expect = 2.0 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 13/84 (15%) Frame = -1 Query: 413 HPSNSTPICTLLAHFLQRLFK---------LALRDIPSVEAVEGVLGDHP----AGADGA 273 HP + H ++ L K +++RD S E ++G+LGDH G +GA Sbjct: 24 HPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLGDHKPEILCGLEGA 83 Query: 272 DLEEAVDGAVEQRVAEVDGHVHLV 201 AVDGA + V+ + G LV Sbjct: 84 AEVAAVDGA-DMVVSAIVGAAGLV 106
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/60 (31%), Positives = 25/60 (41%) Frame = -2 Query: 436 TPYSMXTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257 TP YTP+ AP Y PS +S S + + SP + SA P+ R P Sbjct: 426 TPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPP 485
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = -2 Query: 331 PLWRQSKASSATTLQAPTAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRL 152 P Q KA Q P+ IL+ + G P + TST P SPA +L S + Sbjct: 900 PALPQPKALLERFHQVPSGIILQNKA-----GGAPAAPQTSTSLGPLTSPAASVLVSGQA 954 Query: 151 APGT 140 GT Sbjct: 955 PSGT 958
>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)| Length = 203 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 G PR T FDPA VG++ PGT Sbjct: 145 GYPRHAETGVAFDPARHEVVGVVQDPDAPPGT 176
>BCCA_MYCLE (P46392) Acetyl-/propionyl-coenzyme A carboxylase alpha chain| [Includes: Biotin carboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)] Length = 598 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +3 Query: 333 DISKRQLEETLKKMCKEGAYWGAVAGVYVXMEYGV 437 D ++++ E+ K++CKE Y+GA Y+ + G+ Sbjct: 256 DAQRKEIHESAKRICKEAHYYGAGTVEYLVGQDGL 290
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = -2 Query: 418 TYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATT--LQAPTAPILRKPSTVR 245 TY+ AT+P+Y+P++ I +S SS+ SP + + + + T + +PTAP P++ Sbjct: 1817 TYS-ATSPRYSPNMSI-YSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPA 1874 Query: 244 LSSGLP 227 S P Sbjct: 1875 YSPSSP 1880
>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 768 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%) Frame = -2 Query: 328 LWRQSKASSATTLQAPTAP-----------ILRKPSTVRLSSGLP 227 L RQS AS + +P P ++ KPSTV+LSSG+P Sbjct: 366 LRRQSNASDDSLSLSPGTPPSLLNNSTHRQMMSKPSTVKLSSGIP 410
>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 468 Score = 29.3 bits (64), Expect = 4.5 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Frame = -2 Query: 409 PATAPQYAPSLHIFF-----SVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVR 245 PA+APQ+ PS+ SSS R + L + +Q P+L P V Sbjct: 173 PASAPQFYPSVQSLMPDQYGGPSSSLRVARTLL-------PGSYMQGAYGPMLLTPGVVP 225 Query: 244 LSSGLPRSMATSTLFDPAASPAVG 173 + P S S P A AVG Sbjct: 226 IPGWSPYSAPVSPALSPGAQHAVG 249
>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)| Length = 585 Score = 28.9 bits (63), Expect = 5.9 Identities = 28/92 (30%), Positives = 36/92 (39%) Frame = -2 Query: 415 YTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVRLSS 236 YTP P Y L SV + SPL RQ + + P+L + + V L Sbjct: 90 YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEV-LCM 148 Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 RS AT+ P PA LP AP + Sbjct: 149 DYNRSEATTA--PPRPFPAKPTLPGPPGAPAS 178
>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion| degradation protein 2) (Homozygously deleted in neuroblastoma 1) Length = 1302 Score = 28.9 bits (63), Expect = 5.9 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Frame = -2 Query: 439 STPYSMXTYTPATAPQYAPSLHIFFSVSSSWR-FEISPLWRQSKASSATTLQAPTAPILR 263 STP S + TA PS S +R + ++ W S S ++ +P A + Sbjct: 307 STPLSPHSAASGTAAGSQPS-------SPRYRPYTVTHPWASSGVSILSSSPSPPA-LAS 358 Query: 262 KPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSS-RLAP 146 P V SS R +T PA+ A PSS R++P Sbjct: 359 SPQAVPASSSRQRPSSTGPPLPPASPSATSRRPSSLRISP 398
>ARM_ANOGA (Q7QHW5) Armadillo segment polarity protein| Length = 830 Score = 28.9 bits (63), Expect = 5.9 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -1 Query: 410 PSNSTPICTLLA-HFLQRLFKLALRDIPSVEAVEGVLGDHPAGA--DGADLEEAVDGAV 243 P+N+ P+ A H L RL A +D + G P GA DG +EE V+G V Sbjct: 506 PANAAPLREHGAIHLLVRLLFKAFQDTQRQRSSVASNGSQPPGAYADGVRMEEIVEGTV 564
>ILVD_METKA (Q8TW40) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 549 Score = 28.9 bits (63), Expect = 5.9 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Frame = +3 Query: 171 MPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDCL---HRGDIS 341 +P A +AA + AI G P+ VDG RV DAF+ + G+IS Sbjct: 123 VPGALMAAARLDLPAAIVTGGPMEPGCVDGE---------RVDLIDAFEAVGAYEEGEIS 173 Query: 342 KRQLEETLKKMCKEGAYWGAVAGVY 416 + +LEE ++ C G+ AG++ Sbjct: 174 EEELEELEQRACPGP---GSCAGMF 195
>HRJ97_HUMAN (Q86Y56) Heat repeats-containing protein FLJ20397| Length = 855 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 422 AYIHPSNSTPICTLLAHFLQRLFKLALRDIPSV-EAVEGVLG 300 A IH N + +L+HF QRLF D+P V AV V+G Sbjct: 233 AVIHFGNGKSVDDVLSHFAQRLFD----DVPQVRRAVASVVG 270
>ILVD_FRATT (Q5NH32) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 551 Score = 28.5 bits (62), Expect = 7.7 Identities = 26/92 (28%), Positives = 38/92 (41%) Frame = +3 Query: 141 VPGARREEGRMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDC 320 +PG GR+ G + + G P+ V F GA C Sbjct: 129 MPGCMMALGRLNRPGFVIYGGTIQAGVMRGKPI--DIVTAFQSYGA-------------C 173 Query: 321 LHRGDISKRQLEETLKKMCKEGAYWGAVAGVY 416 L G I++++ +ET+KK C GA GA G+Y Sbjct: 174 LS-GQITEQERQETIKKAC-PGA--GACGGMY 201
>SYT_SALCH (Q57PV3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 642 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = +3 Query: 171 MPTAGLAAGSNK--------VDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDA 311 MP L GS + +DVA+D+G L T+ G + V AC ++ DA Sbjct: 1 MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGELVDACDLIENDA 55
>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable| G-protein coupled receptor 158-like 1) Length = 2367 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -2 Query: 283 PTAPILRKPST--VRLSSGL--PRSMATSTLFDPAASPAVGILPSSRLAP 146 P PI + ST + LS GL PR ++ ++ PA PA+ P+ LAP Sbjct: 929 PHPPIRHQVSTPILALSGGLGEPRMLSPTSTLAPALLPALAPTPAPALAP 978 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,667,272 Number of Sequences: 219361 Number of extensions: 770034 Number of successful extensions: 3344 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3334 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
