>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 436 TPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257
           TP   P YTP+ AP Y PS    ++ S +  +  SP    + A S      P  P  R P
Sbjct: 430 TPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPP 489



 Score = 33.5 bits (75), Expect = 0.28
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 454 SPRTLSTPYSMPTYTPATAPQYAPS 380
           SP    TP  +PTYTP+ AP Y PS
Sbjct: 440 SPAPAYTPSPVPTYTPSPAPAYTPS 464



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 454 SPRTLSTPYSMPTYTPATAPQYAPSLHIFFS 362
           SP    TP   P YTP+ AP Y P+  + +S
Sbjct: 448 SPVPTYTPSPAPAYTPSPAPNYNPAPSVAYS 478

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 454 SPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP 281
           SP    TP   PTYTP+ AP Y+PS    ++ S +  +  +P    S   S +  + P
Sbjct: 428 SPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPP 485



 Score = 33.5 bits (75), Expect = 0.28
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 436 TPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257
           TP   P YTP+ AP Y PS    +S S +  +  SP    +   SA     P+    R P
Sbjct: 426 TPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPP 485

>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
 Frame = -2

Query: 439 STPYSMPTYTPATAPQYAP---SLHIFFSVSSSWRF-EISPLWRQSKASSATTLQAP--- 281
           S P+   T   A AP+  P   ++H   + +S  +  E +PLW  +  SS TT QAP   
Sbjct: 62  SHPFPRATAPTAQAPRTGPPRATVHRPLAATSPAQSPETTPLWATAGPSS-TTFQAPLGP 120

Query: 280 ---TAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
              T P   + ST   +   P     ST   PA +  V     +   P T
Sbjct: 121 SPTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTPRT 170

>CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ras 1|
           (Connector enhancer of KSR1) (hCNK1) (Connector enhancer
           of KSR-like) (CNK homolog protein 1)
          Length = 720

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -2

Query: 451 PRTLSTPYSM-PTYTPATAPQYAPSLHIF-FSVSSSWRFEISPLWRQSKASSATTLQAPT 278
           P+ L +P+   P+ + A     APS  +F F +SS+     SP W  S +     L  P 
Sbjct: 295 PQVLDSPHQRSPSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPP 354

Query: 277 APILRKPSTVRLSSGLPRS 221
            P    P+ V  + GLP S
Sbjct: 355 EPPAILPAGVAGTPGLPES 373

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 30/107 (28%), Positives = 40/107 (37%)
 Frame = -2

Query: 460  SRSPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP 281
            S+ P    TP       P  A    P    F  V++ +     P   Q KA      Q P
Sbjct: 862  SQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVTTPF-----PALPQPKALLERFHQVP 916

Query: 280  TAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
            +  IL+  +      G P +  TST   P  SPA  +L S +   GT
Sbjct: 917  SGIILQNKA-----GGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGT 958

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 460  SRSPRTLSTPYSMPTYTPATAPQYAPSL-HIFFSVSSSWRFEISPLWRQSKASSATTLQA 284
            S +P+  S+P ++PT +P T+   +P+  HI  +VS +     S     +  +++TT  +
Sbjct: 1400 SSTPQPTSSPTTLPTTSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTT--S 1457

Query: 283  PTAPILRKPSTVRLSSGLPRSMATSTLFDPAASP 182
            PT        +   S+  P    T++   P  SP
Sbjct: 1458 PTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSP 1491

>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)|
            (Receptor-linked protein-tyrosine phosphatase 99A)
            (DPTP99A)
          Length = 1301

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
 Frame = -2

Query: 310  ASSATTLQAPTAPILRKPSTVRLSSGLPRSM----------ATSTLFDPAASPAVGILPS 161
            +SS+TT   P+ P  + P T++LSS  P  +          A S +    AS + G  P+
Sbjct: 1125 SSSSTTPPTPSTPTPQPPQTIQLSSHSPSDLSHQISSTVANAASPVTPATASASAGATPT 1184

Query: 160  SRLAP 146
            + + P
Sbjct: 1185 TPMTP 1189

>DXR_CHLTE (Q8KG43) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 382

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
 Frame = -1

Query: 413 HPSNSTXICTLLAHFLQRLFK---------LALRDIPSVEAVEGVLGDHP----AGADGA 273
           HP   +       H ++ L K         +++RD  S E ++G+LGDH      G +GA
Sbjct: 24  HPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLGDHKPEILCGLEGA 83

Query: 272 DLEEAVDGAVEQRVAEVDGHVHLV 201
               AVDGA +  V+ + G   LV
Sbjct: 84  AEVAAVDGA-DMVVSAIVGAAGLV 106

>Y1614_METJA (Q59009) Hypothetical protein MJ1614|
          Length = 251

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +3

Query: 168 RMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAED--AFD---CLHRG 332
           R P   +     ++ + +D+G+  LN+ ++ FLKI    A   + ++   FD   C+ +G
Sbjct: 150 RNPDKEIIENLGELKITLDIGHSFLNKNIENFLKISDKIAHIHIHDNNGEFDEHLCIGKG 209

Query: 333 DISKRQLEETLKKM 374
            I+    ++ LKK+
Sbjct: 210 KINFNNFKKDLKKI 223

>YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 intergenic|
           region
          Length = 418

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
 Frame = -2

Query: 454 SPRTLSTPY--SMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP 281
           SPR L TP   SM T TP    Q   ++ +     ++    I+P+        AT    P
Sbjct: 47  SPRCLPTPILPSMSTNTPVHWSQQVVTIPVAVRNHAAMMPIITPMTSPRPQFEATAPSPP 106

Query: 280 TAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPG 143
            AP+  K   ++    LP S   ST+ D  + P   ILP   +  G
Sbjct: 107 LAPVAIKLPDLK----LPPSPVPSTVEDRVSHP---ILPKIVIGNG 145

>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -2

Query: 439 STPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRK 260
           S P S+PT  PA+ P+ AP +        S   ++  L  + +AS++  LQ P AP  RK
Sbjct: 565 SRPPSLPTPRPASQPRKAPVI--------SSTPKLPALAAREEASTSRLLQPPEAP--RK 614

Query: 259 PS 254
           P+
Sbjct: 615 PA 616

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
 Frame = -2

Query: 439  STPYSMPT--YTP------ATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATT--L 290
            S+P   P+  Y+P      AT+P+Y+P++ I +S SS+     SP +  +  + + T  +
Sbjct: 1801 SSPQHSPSNQYSPTGSTYSATSPRYSPNMSI-YSPSSTKYSPTSPTYTPTARNYSPTSPM 1859

Query: 289  QAPTAPILRKPSTVRLSSGLP 227
             +PTAP    P++   S   P
Sbjct: 1860 YSPTAPSHYSPTSPAYSPSSP 1880

>TBX3_MOUSE (P70324) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 741

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/92 (26%), Positives = 37/92 (40%)
 Frame = -2

Query: 460 SRSPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP 281
           S  PR   +PYS+P   P ++   A +L                    S AS+A  L   
Sbjct: 631 SMRPRLRYSPYSIPVPVPDSSSLLATAL-------------------PSMASAAGPLDGK 671

Query: 280 TAPILRKPSTVRLSSGLPRSMATSTLFDPAAS 185
            A +   P++V + SG   +  +STL   + S
Sbjct: 672 AAALAASPASVAVDSGSELNSRSSTLSSGSVS 703

>UBE4B_HUMAN (O95155) Ubiquitin conjugation factor E4 B (Ubiquitin-fusion|
           degradation protein 2) (Homozygously deleted in
           neuroblastoma 1)
          Length = 1302

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
 Frame = -2

Query: 451 PRTLSTPYSMPTYTPA----TAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQA 284
           P T  +P+S  + T A    ++P+Y P             + ++  W  S  S  ++  +
Sbjct: 306 PSTPLSPHSAASGTAAGSQPSSPRYRP-------------YTVTHPWASSGVSILSSSPS 352

Query: 283 PTAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSS-RLAP 146
           P A +   P  V  SS   R  +T     PA+  A    PSS R++P
Sbjct: 353 PPA-LASSPQAVPASSSRQRPSSTGPPLPPASPSATSRRPSSLRISP 398

>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)|
          Length = 768

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%)
 Frame = -2

Query: 328 LWRQSKASSATTLQAPTAP-----------ILRKPSTVRLSSGLP 227
           L RQS AS  +   +P  P           ++ KPSTV+LSSG+P
Sbjct: 366 LRRQSNASDDSLSLSPGTPPSLLNNSTHRQMMSKPSTVKLSSGIP 410

>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 468

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
 Frame = -2

Query: 409 PATAPQYAPSLHIFF-----SVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVR 245
           PA+APQ+ PS+           SSS R   + L         + +Q    P+L  P  V 
Sbjct: 173 PASAPQFYPSVQSLMPDQYGGPSSSLRVARTLL-------PGSYMQGAYGPMLLTPGVVP 225

Query: 244 LSSGLPRSMATSTLFDPAASPAVG 173
           +    P S   S    P A  AVG
Sbjct: 226 IPGWSPYSAPVSPALSPGAQHAVG 249

>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)|
          Length = 279

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 28/103 (27%), Positives = 35/103 (33%)
 Frame = -2

Query: 454 SPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTA 275
           SP    TP   PT TP  +P   P+L    + S +     SP    S   S T    PT 
Sbjct: 52  SPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTP 111

Query: 274 PILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAP 146
                P+     +  P    + T   P  SP     PS    P
Sbjct: 112 SPTPSPTPTPSPTPSPTPTPSPT---PTPSPTPSPTPSPTPTP 151

>TBX3_RAT (Q7TST9) T-box transcription factor TBX3 (T-box protein 3)|
          Length = 743

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/92 (26%), Positives = 38/92 (41%)
 Frame = -2

Query: 460 SRSPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP 281
           S  PR   +PYS+P   P ++   A +L                    S AS+A  L   
Sbjct: 633 SMRPRLRYSPYSIPVPVPDSSSLLATAL-------------------PSMASAAGPLDGK 673

Query: 280 TAPILRKPSTVRLSSGLPRSMATSTLFDPAAS 185
           +A +   P++V + SG   +  +STL   + S
Sbjct: 674 SAVLAASPASVAVDSGSELNSRSSTLSSGSVS 705

>HRJ97_HUMAN (Q86Y56) Heat repeats-containing protein FLJ20397|
          Length = 855

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 422 AYIHPSNSTXICTLLAHFLQRLFKLALRDIPSV-EAVEGVLG 300
           A IH  N   +  +L+HF QRLF     D+P V  AV  V+G
Sbjct: 233 AVIHFGNGKSVDDVLSHFAQRLFD----DVPQVRRAVASVVG 270

>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)|
          Length = 203

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
           G PR   T   FDPA    VG++      PGT
Sbjct: 145 GYPRHAETGVAFDPARHEVVGVVQDPDAPPGT 176

>TAF1C_MOUSE (Q6PDZ2) TATA box-binding protein-associated factor, RNA polymerase|
           I, subunit C (TATA box-binding protein-associated factor
           1C) (TBP-associated factor 1C) (TBP-associated factor
           RNA polymerase I 95 kDa) (TAFI95)
          Length = 836

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 26/91 (28%), Positives = 39/91 (42%)
 Frame = -2

Query: 451 PRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAP 272
           P  LST   +P   P  APQ +    +   ++ +W   ++  WR+ +  ++ T      P
Sbjct: 661 PGDLST---LPRAEPPPAPQCSQQDELTERLTEAWEGRVTAWWRRHRGETSETQTQSKRP 717

Query: 271 ILRKPSTVRLSSGLPRSMATSTLFDPAASPA 179
             R     +LSS    S  TS L  P AS A
Sbjct: 718 KRR----TQLSSTF--SSFTSYLDSPDASSA 742

>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)|
          Length = 585

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 28/92 (30%), Positives = 36/92 (39%)
 Frame = -2

Query: 415 YTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVRLSS 236
           YTP   P Y   L    SV    +   SPL RQ   +    +     P+L + + V L  
Sbjct: 90  YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEV-LCM 148

Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
              RS AT+    P   PA   LP    AP +
Sbjct: 149 DYNRSEATTA--PPRPFPAKPTLPGPPGAPAS 178

>PF21A_HUMAN (Q96BD5) PHD finger protein 21A (BRAF35-HDAC complex protein BHC80)|
           (BHC80a)
          Length = 680

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
 Frame = -2

Query: 454 SPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSS-----SWRFEISPLWRQSKASSATTL 290
           +P+ +  P  +  +TP T P    S+H    V+      +  F ++ L     A+  T L
Sbjct: 256 APQLIQRPVMLTKFTPTTLPTSQNSIHPVRVVNGQTATIAKTFPMAQLTSIVIATPGTRL 315

Query: 289 QAPTAPILRKPS----TVRLSSGLPRSMATSTLFDPAASP 182
             P    L KPS    TV+  +        S    P A+P
Sbjct: 316 AGPQTVQLSKPSLEKQTVKSHTETDEKQTESRTITPPAAP 355

>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable|
            G-protein coupled receptor 158-like 1)
          Length = 2367

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 283  PTAPILRKPST--VRLSSGL--PRSMATSTLFDPAASPAVGILPSSRLAP 146
            P  PI  + ST  + LS GL  PR ++ ++   PA  PA+   P+  LAP
Sbjct: 929  PHPPIRHQVSTPILALSGGLGEPRMLSPTSTLAPALLPALAPTPAPALAP 978

>SYT_SALCH (Q57PV3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 642

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
 Frame = +3

Query: 171 MPTAGLAAGSNK--------VDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDA 311
           MP   L  GS +        +DVA+D+G  L   T+ G +    V AC ++  DA
Sbjct: 1   MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGELVDACDLIENDA 55

>PRP33_DAUCA (P06600) Proline-rich 33 kDa extensin-related protein precursor|
           (Fragment)
          Length = 211

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 462 SHGHHGPFPLHTPCLHTPQQQHX-NMHPPCT 373
           +H  H P P+H P +H P  +H   +H P T
Sbjct: 125 AHPIHKPQPIHRPPVHKPPTEHKPPVHEPAT 155

>KCNH4_RAT (Q9R1T9) Potassium voltage-gated channel subfamily H member 4|
            (Voltage-gated potassium channel subunit Kv12.3)
            (Ether-a-go-go-like potassium channel 1) (ELK channel 1)
            (rElk1) (Brain-specific eag-like channel 2) (BEC2)
          Length = 1017

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
 Frame = -2

Query: 442  LSTPYSMPTYTPATAPQ-YAPSLHIFFSVSSSWRF--------------EISPLWRQSKA 308
            +S+P   PT +PA A +  +PSLH     S++W+               ++SP       
Sbjct: 772  VSSPSLSPTPSPALAGRGSSPSLHGPPRGSAAWKPPQLLTPPLGTFGPPDLSPRIVDGIE 831

Query: 307  SSATTLQAPTAPILRKPSTVRLSSGLPRS 221
             S+ T +APT    ++P   R  S  P S
Sbjct: 832  DSSNTAEAPTFRFSKRPEPTRTRSQAPLS 860

>ILVD_METKA (Q8TW40) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 549

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 171 MPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDCL---HRGDIS 341
           +P A +AA    +  AI  G P+    VDG          RV   DAF+ +     G+IS
Sbjct: 123 VPGALMAAARLDLPAAIVTGGPMEPGCVDGE---------RVDLIDAFEAVGAYEEGEIS 173

Query: 342 KRQLEETLKKMC 377
           + +LEE  ++ C
Sbjct: 174 EEELEELEQRAC 185

>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/94 (24%), Positives = 43/94 (45%)
 Frame = -2

Query: 454  SPRTLSTPYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTA 275
            SP + S   + P Y+P T+PQY+PS   +   S ++          S  + ++   +PT+
Sbjct: 1732 SPTSPSYSPTSPQYSP-TSPQYSPSSPTYTPSSPTYN-------PTSPRAFSSPQYSPTS 1783

Query: 274  PILRKPSTVRLSSGLPRSMATSTLFDPAASPAVG 173
            P    P++   +   P+   TS  + P+ +   G
Sbjct: 1784 PTY-SPTSPSYTPSSPQYSPTSPTYTPSPADQPG 1816


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,362,890
Number of Sequences: 219361
Number of extensions: 842239
Number of successful extensions: 3602
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3573
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)