ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01e03 |
|---|---|
| Clone Library Name | barley_pub |
>AVT1_YEAST (P47082) Vacuolar amino acid transporter 1| Length = 602 Score = 39.3 bits (90), Expect = 0.005 Identities = 21/51 (41%), Positives = 29/51 (56%) Frame = +2 Query: 317 ITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADCYRTGDP 469 I +IG G+L+L GWV+G L +FA T+ T+ LL+ C T DP Sbjct: 218 INVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDT-DP 267
>S36A1_HUMAN (Q7Z2H8) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 476 Score = 38.9 bits (89), Expect = 0.007 Identities = 17/59 (28%), Positives = 31/59 (52%) Frame = +2 Query: 275 QRRTGTVWTASAHIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADC 451 Q + T + H++ IG+G+L L A G V+GP++L++ + + G+L C Sbjct: 43 QSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKC 101
>S36A1_RAT (Q924A5) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) (Lysosomal amino acid transporter 1) (LYAAT-1) (Neutral amino acid/proton symporter) Length = 475 Score = 36.2 bits (82), Expect = 0.045 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +2 Query: 311 HIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADC 451 H++ IG+G+L L A G ++GP++L++ + + G+L C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>S36A1_MOUSE (Q8K4D3) Proton-coupled amino acid transporter 1 (Proton/amino acid| transporter 1) (Solute carrier family 36 member 1) Length = 475 Score = 36.2 bits (82), Expect = 0.045 Identities = 14/47 (29%), Positives = 27/47 (57%) Frame = +2 Query: 311 HIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADC 451 H++ IG+G+L L A G ++GP++L++ + + G+L C Sbjct: 54 HLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKC 100
>YSPK_CAEEL (Q19425) Hypothetical protein F13H10.3 in chromosome IV| Length = 615 Score = 34.7 bits (78), Expect = 0.13 Identities = 14/45 (31%), Positives = 29/45 (64%) Frame = +2 Query: 314 IITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLAD 448 I ++G+ +L++ WA Q G V+G + ++ AAI +YT+ ++ + Sbjct: 172 IWNTMMGTSLLAMPWALQQAGLVLGIIIMLSMAAICFYTAYIVIE 216
>AAPQ_RHILV (Q52813) General L-amino acid transport system permease protein| aapQ Length = 400 Score = 32.7 bits (73), Expect = 0.50 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 14/78 (17%) Frame = +2 Query: 272 KQRRTG----TVWTASAHIITAVIGSGVLSLAWATAQL----------GWVVGPVTLMLF 409 +Q TG TVWTA A I+ + V+S T + G VVGP + LF Sbjct: 214 RQAATGQPFHTVWTAIALIVGLPLLVFVVSGFPLTFDVPVAGKFNLTGGSVVGPEFMSLF 273 Query: 410 AAITYYTSGLLADCYRTG 463 A+++YT+ +A+ R G Sbjct: 274 LALSFYTASFIAEIVRGG 291
>TYRP_SHIFL (P0AAD5) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = +2 Query: 272 KQRRTGTVWTASAHIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADC 451 K R G+V+ + IG+G+L++ A A +G+ V + L+ A+ YT+ LL + Sbjct: 2 KNRTLGSVFIVAG----TTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEV 57 Query: 452 YR 457 Y+ Sbjct: 58 YQ 59
>TYRP_ECOLI (P0AAD4) Tyrosine-specific transport protein (Tyrosine permease)| Length = 403 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/62 (30%), Positives = 34/62 (54%) Frame = +2 Query: 272 KQRRTGTVWTASAHIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADC 451 K R G+V+ + IG+G+L++ A A +G+ V + L+ A+ YT+ LL + Sbjct: 2 KNRTLGSVFIVAG----TTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEV 57 Query: 452 YR 457 Y+ Sbjct: 58 YQ 59
>STP4_ARATH (Q39228) Sugar transport protein 4 (Hexose transporter 4)| Length = 514 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 284 TGTVWTASAHIITAVIGSGVLSLAWATAQLGWVV 385 TG + + A++I A+I V AW+ LGW+V Sbjct: 377 TGNIGKSDANLIVALICIYVAGFAWSWGPLGWLV 410
>STP10_ARATH (Q9LT15) Sugar transport protein 10 (Hexose transporter 10)| Length = 514 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/34 (44%), Positives = 19/34 (55%) Frame = +2 Query: 284 TGTVWTASAHIITAVIGSGVLSLAWATAQLGWVV 385 TGT+ A+A I A I V AW+ LGW+V Sbjct: 379 TGTLTPATADWILAFICVYVAGFAWSWGPLGWLV 412
>EGF_PIG (Q00968) Pro-epidermal growth factor precursor (EGF) [Contains:| Epidermal growth factor] Length = 1214 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -3 Query: 391 RPDDPAELCRRPGEGEHAGADDGRDDVRTGCPYRPCSP 278 RP +P +C P H G +DGR VR Y C P Sbjct: 943 RPSEPGRICPDPTPPSHLG-EDGRYSVRNS--YSECPP 977
>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) (P145) Length = 1229 Score = 28.5 bits (62), Expect = 9.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 414 AANSIRVTGPTTQPSCAVAQARESTPEPMTAVM 316 A+NS+ T PTTQPS +T P T+++ Sbjct: 535 ASNSVTETPPTTQPSFTFTLPAAATASPPTSLL 567
>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +2 Query: 146 DGEMTKDVEMAARNGSKGAAAGEAYYPSPPGQXXXXXXXXXXKQRRTGTVWTASAHIITA 325 D E +E AR +G AAG A S PG T +SA I TA Sbjct: 1759 DDEFVNVMEGKARTAPQGEAAGTATTASVPGTTTDGMDPGVVATTSVVTAENSSASIATA 1818 Query: 326 VIG 334 IG Sbjct: 1819 GIG 1821
>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +2 Query: 146 DGEMTKDVEMAARNGSKGAAAGEAYYPSPPGQXXXXXXXXXXKQRRTGTVWTASAHIITA 325 D E +E AR +G AAG A S PG T +SA I TA Sbjct: 1759 DDEFVNVMEGKARTAPQGEAAGTATTASVPGTTTDGLDPGVVATTSVVTAENSSASIATA 1818 Query: 326 VIG 334 IG Sbjct: 1819 GIG 1821
>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48); Capsid protein VP60, sub Length = 2344 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/63 (33%), Positives = 24/63 (38%) Frame = +2 Query: 146 DGEMTKDVEMAARNGSKGAAAGEAYYPSPPGQXXXXXXXXXXKQRRTGTVWTASAHIITA 325 D E +E AR +G AAG A S PG T +SA I TA Sbjct: 1759 DDEFVNVMEGKARTAPQGEAAGTATTASVPGTTTDGMDPGVVATTSVVTAENSSASIATA 1818 Query: 326 VIG 334 IG Sbjct: 1819 GIG 1821
>LAX4_MEDTR (Q8L884) Auxin transporter-like protein 4 (AUX1-like protein 4)| (MtLAX4) Length = 482 Score = 28.5 bits (62), Expect = 9.4 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +2 Query: 287 GTVWTASAHIITAVIGSGVLSLAWATAQLGWVVGPVTLMLFAAITYYTSGLLADCY 454 G+VW A + + +L+L ++ +QLG V G V + + I +T+ L++ Y Sbjct: 46 GSVWDAWFSCASNQVAQVLLTLPYSFSQLGMVSGIVFQIFYGLIGSWTAYLISVLY 101
>VGP_EBORS (Q89853) Structural glycoprotein precursor (Virion spike| glycoprotein) [Contains: GP1; GP2] Length = 677 Score = 28.5 bits (62), Expect = 9.4 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 11/79 (13%) Frame = +2 Query: 155 MTKDVEMAARNGSKGAAAGEAYYPSPPG------QXXXXXXXXXXKQRRTGTVWTAS--- 307 MT+D + A + G + G A PS PG KQ+R+ TA+ Sbjct: 454 MTQDPQETANSSKLGTSPGSAAEPSQPGFTINTVSKVADSLSPTRKQKRSVRQNTANKCN 513 Query: 308 --AHIITAVIGSGVLSLAW 358 H TAV + LAW Sbjct: 514 PDLHYWTAVDEGAAVGLAW 532 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,650,095 Number of Sequences: 219361 Number of extensions: 607976 Number of successful extensions: 2070 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2026 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2068 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
