ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01e02 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 153 bits (386), Expect = 2e-37 Identities = 80/103 (77%), Positives = 80/103 (77%) Frame = +3 Query: 114 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXX 293 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF Sbjct: 17 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAA 76 Query: 294 XDIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI Sbjct: 77 ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 119
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 77.8 bits (190), Expect = 1e-14 Identities = 46/93 (49%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = +3 Query: 147 SVSCSASSGDN-NNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323 S+ CS S+ + NN+ SL A DI+GLTPCK Sbjct: 33 SIVCSGSTDEKINNADGKSSLKA-----LSAALALSSILVSSTVPALPASADISGLTPCK 87 Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 ESK FAKREKQS+KKL SSLK YAPDSAPALAI Sbjct: 88 ESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 71.2 bits (173), Expect = 9e-13 Identities = 35/42 (83%), Positives = 38/42 (90%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 DIAGLTPCKESK FAKREKQ++KKL +SLK YA DSAPALAI Sbjct: 78 DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAI 119
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 58.5 bits (140), Expect = 6e-09 Identities = 35/93 (37%), Positives = 46/93 (49%) Frame = +3 Query: 144 LSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323 L V+C A + + T +L+AS DIAGLTPC Sbjct: 24 LRVACQAQKNETASKVGT-ALAAS-----------ALAAAVSLSAPSAAMADIAGLTPCS 71 Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 ESKA+AK EK+ +K L LK+Y DSAPA+A+ Sbjct: 72 ESKAYAKLEKKELKTLEKRLKQYEADSAPAVAL 104
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 52.0 bits (123), Expect = 6e-07 Identities = 24/42 (57%), Positives = 29/42 (69%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 D+AGL PCK SK F +R SVKKL S L KY P++ P LA+ Sbjct: 23 DVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLAL 64
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 49.7 bits (117), Expect = 3e-06 Identities = 22/42 (52%), Positives = 30/42 (71%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 D+AGL PC +S AF +R K + ++L + LKKY P SAPA A+ Sbjct: 26 DVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEAL 67
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/42 (59%), Positives = 27/42 (64%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 DI GLT C ES AF KR K SVKKL + KY S PALA+ Sbjct: 25 DIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALAL 66
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 48.5 bits (114), Expect = 6e-06 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 422 ++AGL PCK+S AF KR SVKKL + L KY ++ PALA+ Sbjct: 25 EVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALAL 66
>PSAF_CUCSA (P42048) Photosystem I reaction center subunit III (Photosystem I| 18.5 kDa protein) (PSI-F) (PS I subunit 7) (Fragment) Length = 26 Score = 42.4 bits (98), Expect = 4e-04 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKL 371 DI+GLTPCKESK F KREKQ K L Sbjct: 1 DISGLTPCKESKQFXKREKQQXKXL 25
>PSAF_PEA (P20119) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQ 356 I+GLTPCKESK FAKREKQ Sbjct: 2 ISGLTPCKESKQFAKREKQ 20
>PSAF_MAIZE (P13193) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 33.1 bits (74), Expect = 0.27 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREK 353 IAGLTP KESKAFAK EK Sbjct: 2 IAGLTPPKESKAFAKXEK 19
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.79 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSV 362 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.79 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSV 362 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 29.3 bits (64), Expect = 3.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 309 LTPCKESKAFAKREKQSVKKLNSSLKKYAPDS 404 LTPC+ S F R ++KKL + L Y +S Sbjct: 31 LTPCENSAQFQARLNNNIKKLENKLTYYKQNS 62
>MXI1_RAT (O09015) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_MOUSE (P50540) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>MXI1_HUMAN (P50539) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGTSNTSTANRS 70
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 28.5 bits (62), Expect = 6.7 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKR 347 D+AGLTPC ES F +R Sbjct: 24 DVAGLTPCSESPRFIQR 40
>I11RA_PONPY (Q5RF19) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 120 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 224 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>I11RA_HUMAN (Q14626) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 6.7 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 120 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 224 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>PSAF_SYNVU (P23078) Photosystem I reaction center subunit III (PSI-F)| (Fragment) Length = 27 Score = 28.1 bits (61), Expect = 8.8 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSV 362 D+AGL P K+S AF KR +V Sbjct: 1 DVAGLVPAKDSPAFQKRAAAAV 22 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.115 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,717,575 Number of Sequences: 219361 Number of extensions: 211057 Number of successful extensions: 1227 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1226 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits)
