ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet01d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGKY_WHEAT (P12783) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3) 39 0.005
2PGKY_TOBAC (Q42962) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3) 31 1.1
3PGKH_VOLCA (Q9SBN4) Phosphoglycerate kinase, chloroplast precurs... 30 2.4
4PTH_BRUSU (P65864) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 28 6.9
5PTH_BRUME (P65863) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 28 6.9
6PTH_BRUAB (Q9AEQ5) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH) 28 6.9
7GP135_RAT (Q7TQN7) Probable G-protein coupled receptor 135 28 9.0

>PGKY_WHEAT (P12783) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)|
          Length = 401

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +2

Query: 107 MATKRSVGTLGEADLKGK 160
           MATKRSVGTLGEADLKGK
Sbjct: 1   MATKRSVGTLGEADLKGK 18



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>PGKY_TOBAC (Q42962) Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)|
          Length = 401

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 107 MATKRSVGTLGEADLKGK 160
           MA K+SVG+L EADLKGK
Sbjct: 1   MAVKKSVGSLKEADLKGK 18



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>PGKH_VOLCA (Q9SBN4) Phosphoglycerate kinase, chloroplast precursor (EC|
           2.7.2.3)
          Length = 462

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  PNRSQAKPIA-TPFHPQXXXXXXXXXXXILHGMATKRSVGTLGEADLKGK 160
           P  S A+P+  + F P+            +   A K+SVG LG+ADL+GK
Sbjct: 28  PFSSVARPVLRSTFAPEVSIDIRRAGRSRIVVEAVKKSVGDLGKADLEGK 77



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>PTH_BRUSU (P65864) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 250

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 30 PSPSPLHSIHNLGQIAADQILR 95
          P P   H+ HN+G +AAD+I R
Sbjct: 10 PGPQYAHNRHNIGFMAADEIFR 31



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>PTH_BRUME (P65863) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 250

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 30 PSPSPLHSIHNLGQIAADQILR 95
          P P   H+ HN+G +AAD+I R
Sbjct: 10 PGPQYAHNRHNIGFMAADEIFR 31



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>PTH_BRUAB (Q9AEQ5) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 250

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 30 PSPSPLHSIHNLGQIAADQILR 95
          P P   H+ HN+G +AAD+I R
Sbjct: 10 PGPQYAHNRHNIGFMAADEIFR 31



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>GP135_RAT (Q7TQN7) Probable G-protein coupled receptor 135|
          Length = 457

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +1

Query: 4   PHPSKQKPSQAHRHSIPSTTSAXXXXXXXXXXXXXXXQEERGHPRGGGSQG 156
           P  S   P  AH     ST +A               Q + G P   GS+G
Sbjct: 11  PAASATLPGSAHPGGAASTATAAALSFSSVATVTLGNQSDAGRPEAAGSRG 61


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.300    0.123    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,163,152
Number of Sequences: 219361
Number of extensions: 398088
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 80,573,946
effective HSP length: 29
effective length of database: 74,212,477
effective search space used: 1781099448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
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