ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet01d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X15232.1|TAPGKCYT Wheat mRNA for cytosolic phosphoglycerate ... 165 5e-38
2gb|BT016355.1| Zea mays clone Contig188 mRNA sequence 90 2e-15
3gb|AY103553.1| Zea mays PCO152527 mRNA sequence 90 2e-15
4ref|XM_464267.1| Oryza sativa (japonica cultivar-group), mRNA 64 1e-07
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
7dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
8dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
9dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic D... 64 1e-07
10dbj|AK101622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
11dbj|AK070705.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
12dbj|AK070041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 1e-07
13ref|XM_970300.1| PREDICTED: Tribolium castaneum similar to CG121... 46 0.032
14gb|AC122522.4| Mus musculus BAC clone RP24-486D23 from chromosom... 42 0.50
15gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswel... 42 0.50
16gb|AC010003.8| Drosophila melanogaster 3L BAC RP98-6L11 (Roswell... 42 0.50
17gb|CP000249.1| Frankia sp. CcI3, complete genome 42 0.50
18gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64... 42 0.50
19ref|NM_105805.2| Arabidopsis thaliana unknown protein AT1G71360 ... 40 2.0
20gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 2.0
21ref|XM_506988.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.0
22ref|XM_467925.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.0
23emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 2.0
24dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 2.0
25dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
26gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I... 40 2.0
27gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26... 40 2.0
28gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, comple... 40 2.0
29dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.0
31dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
32dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.0
33dbj|AK059956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
34dbj|AK058782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.0
35ref|XM_480631.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.8
36gb|AC009911.11| Drosophila melanogaster clone BACR01N17, complet... 38 7.8
37gb|AC112898.5| Rattus norvegicus 2 BAC CH230-157M2 (Children's H... 38 7.8
38gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete... 38 7.8
39gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete se... 38 7.8
40gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 38 7.8
41gb|AC166995.2| Mus musculus BAC clone RP23-255N15 from chromosom... 38 7.8
42ref|XM_844173.1| PREDICTED: Canis familiaris similar to Ig lambd... 38 7.8
43gb|AC146269.3| Pan troglodytes BAC clone RP43-29B18 from 7, comp... 38 7.8
44gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosom... 38 7.8
45gb|AC122053.3| Mus musculus BAC clone RP24-463C3 from 3, complet... 38 7.8
46gb|AC005100.2| Homo sapiens BAC clone CTA-351O6 from 7, complete... 38 7.8
47gb|AC166831.3| Mus musculus BAC clone RP23-270P14 from chromosom... 38 7.8
48emb|AL365277.23| Human DNA sequence from clone RP11-69E11 on chr... 38 7.8
49ref|XM_782071.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 7.8
50gb|AC163106.4| Mus musculus BAC clone RP23-278O13 from chromosom... 38 7.8
51gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, comp... 38 7.8
52gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell... 38 7.8
53gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswel... 38 7.8
54gb|CP000133.1| Rhizobium etli CFN 42, complete genome 38 7.8
55gb|AC108114.3| Homo sapiens chromosome 5 clone RP11-289K10, comp... 38 7.8
56dbj|AB218829.1| Bursaphelenchus parvispicularis gene for SSU RNA... 38 7.8
57gb|AC012625.7| Homo sapiens chromosome 5 clone CTD-2091N23, comp... 38 7.8
58gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, comp... 38 7.8
59gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 38 7.8
60gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosom... 38 7.8
61gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 7.8
62dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
63dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
64gb|AC006236.2| Homo sapiens chromosome 17, clone CTB-162E12, com... 38 7.8
65dbj|AB179621.1| Viral hemorrhagic septicemia virus genomic RNA, ... 38 7.8
66dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 38 7.8
67dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 7.8
68dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 7.8
69dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.8
70dbj|AK062824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.8
71gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72... 38 7.8
72gb|AF030026.1|AF030026 Ovis aries OTCR6 T-cell receptor beta cha... 38 7.8
73gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 ... 38 7.8
74emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4,... 38 7.8
75emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4,... 38 7.8
76gb|AF035479.1|AF035479 Capra hircus T cell receptor beta chain T... 38 7.8
77gb|U59411.1|CHU59411 Capra hircus T-cell receptor beta chain, va... 38 7.8
78emb|AL929197.6| Mouse DNA sequence from clone RP23-47C18 on chro... 38 7.8
79emb|AL033526.24|HS110F11 Human DNA sequence from clone RP1-110F1... 38 7.8
80emb|AJ006346.1|BTA6346 Bos taurus mRNA for T-cell receptor beta ... 38 7.8
81dbj|AB060726.1| Viral hemorrhagic septicemia virus gene for P pr... 38 7.8
82gb|U02630.1|HSU02630 Hemorrhagic septicemia virus Makah polymera... 38 7.8 
>emb|X15232.1|TAPGKCYT Wheat mRNA for cytosolic phosphoglycerate kinase (EC 2.7.2.3)
          Length = 1473

 Score =  165 bits (83), Expect = 5e-38
 Identities = 122/134 (91%), Gaps = 2/134 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  gccaagcccatcgccactccattccatccacaacctcggccagatcgccgccgatcagat 88
           ||||||||||||||||||||| |||| | || |||||| ||||||||||||||||  |||
Sbjct: 3   gccaagcccatcgccactccaatccagcgaccacctcgcccagatcgccgccgattcgat 62

                                                                       
Query: 89  cctccgatcctccacgggatggcgaccaagaggagcgtgggcaccctcggggaggcggat 148
           ||   | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccg--gttcctcgacgggatggcgaccaagaggagcgtgggcaccctcggggaggcggat 120

                         
Query: 149 ctcaaggggaagaa 162
           ||||||||||||||
Sbjct: 121 ctcaaggggaagaa 134
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>gb|BT016355.1| Zea mays clone Contig188 mRNA sequence
          Length = 1600

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                     
Query: 106  gatggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
            ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 1490 gatggcgacgaagaggagcgtgggcaccctcggcgaggcggatctgaaggggaagaa 1434
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>gb|AY103553.1| Zea mays PCO152527 mRNA sequence
          Length = 1856

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 54/57 (94%)
 Strand = Plus / Plus

                                                                    
Query: 106 gatggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
           ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 211 gatggcgacgaagaggagcgtgggcaccctcggcgaggcggatctgaaggggaagaa 267
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>ref|XM_464267.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1543

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 107 atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
           |||||||| |||||||||||||| || || |||||||||||||| | |||||||||
Sbjct: 86  atggcgacgaagaggagcgtggggacgctgggggaggcggatctgagggggaagaa 141
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 107      atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
                ||||||| |||||||||||||||||||||   |||| ||||||| |||||||||||
Sbjct: 27295901 atggcgagcaagaggagcgtgggcaccctgacggagtcggatctgaaggggaagaa 27295846
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                       
Query: 107     atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
               |||||||| |||||||||||||| || || |||||||||||||| | |||||||||
Sbjct: 3727742 atggcgacgaagaggagcgtggggacgctgggggaggcggatctgagggggaagaa 3727797



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 65       cggccagatcgccgccgatc 84
                ||||||||||||||||||||
Sbjct: 32108399 cggccagatcgccgccgatc 32108380
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>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0637D03
          Length = 180159

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 107    atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
              ||||||| |||||||||||||||||||||   |||| ||||||| |||||||||||
Sbjct: 152917 atggcgagcaagaggagcgtgggcaccctgacggagtcggatctgaaggggaagaa 152862
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 107   atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
             ||||||| |||||||||||||||||||||   |||| ||||||| |||||||||||
Sbjct: 38728 atggcgagcaagaggagcgtgggcaccctgacggagtcggatctgaaggggaagaa 38673
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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                     
Query: 107   atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
             |||||||| |||||||||||||| || || |||||||||||||| | |||||||||
Sbjct: 68059 atggcgacgaagaggagcgtggggacgctgggggaggcggatctgagggggaagaa 68114
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>dbj|AK101622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052L01, full
           insert sequence
          Length = 1569

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 107 atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
           ||||||| |||||||||||||||||||||   |||| ||||||| |||||||||||
Sbjct: 102 atggcgagcaagaggagcgtgggcaccctgacggagtcggatctgaaggggaagaa 157
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>dbj|AK070705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060M06, full
           insert sequence
          Length = 1571

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 107 atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
           ||||||| |||||||||||||||||||||   |||| ||||||| |||||||||||
Sbjct: 104 atggcgagcaagaggagcgtgggcaccctgacggagtcggatctgaaggggaagaa 159
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>dbj|AK070041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036N24, full
           insert sequence
          Length = 1543

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 107 atggcgaccaagaggagcgtgggcaccctcggggaggcggatctcaaggggaagaa 162
           |||||||| |||||||||||||| || || |||||||||||||| | |||||||||
Sbjct: 86  atggcgacgaagaggagcgtggggacgctgggggaggcggatctgagggggaagaa 141
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>ref|XM_970300.1| PREDICTED: Tribolium castaneum similar to CG12199-PA, isoform A
            (LOC664293), mRNA
          Length = 2354

 Score = 46.1 bits (23), Expect = 0.032
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 101  cacgggatggcgaccaagaggag 123
            |||||||||||||||||||||||
Sbjct: 1392 cacgggatggcgaccaagaggag 1414
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>gb|AC122522.4| Mus musculus BAC clone RP24-486D23 from chromosome 5, complete sequence
          Length = 186083

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    aaacagaagccaagccaagcc 36
             |||||||||||||||||||||
Sbjct: 90355 aaacagaagccaagccaagcc 90335
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>gb|AC104507.5| Drosophila melanogaster 3L BAC RP98-26J11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 183911

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 16     aaacagaagccaagccaagcc 36
              |||||||||||||||||||||
Sbjct: 132277 aaacagaagccaagccaagcc 132257
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>gb|AC010003.8| Drosophila melanogaster 3L BAC RP98-6L11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 183291

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    aaacagaagccaagccaagcc 36
             |||||||||||||||||||||
Sbjct: 12684 aaacagaagccaagccaagcc 12664
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 123     gcgtgggcaccctcggggagg 143
               |||||||||||||||||||||
Sbjct: 3353852 gcgtgggcaccctcggggagg 3353832
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>gb|AE003521.3| Drosophila melanogaster chromosome 3L, section 64 of 83 of the complete
             sequence
          Length = 271237

 Score = 42.1 bits (21), Expect = 0.50
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    aaacagaagccaagccaagcc 36
             |||||||||||||||||||||
Sbjct: 46714 aaacagaagccaagccaagcc 46694
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>ref|NM_105805.2| Arabidopsis thaliana unknown protein AT1G71360 mRNA, complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   aacagaagccaagccaagcc 36
            ||||||||||||||||||||
Sbjct: 1337 aacagaagccaagccaagcc 1318
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     cctcggccagatcgccgccg 81
              ||||||||||||||||||||
Sbjct: 553886 cctcggccagatcgccgccg 553867
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>ref|XM_506988.1| PREDICTED Oryza sativa (japonica cultivar-group), P0486G03.12 mRNA
          Length = 917

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  cggccagatcgccgccgatc 84
           ||||||||||||||||||||
Sbjct: 214 cggccagatcgccgccgatc 233
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>ref|XM_467925.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  cggccagatcgccgccgatc 84
           ||||||||||||||||||||
Sbjct: 183 cggccagatcgccgccgatc 202
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     caacctcggccagatcgccg 78
              ||||||||||||||||||||
Sbjct: 824090 caacctcggccagatcgccg 824109
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     cctcggccagatcgccgccg 81
              ||||||||||||||||||||
Sbjct: 637793 cctcggccagatcgccgccg 637774



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 64      tcggccagatcgccgccga 82
               |||||||||||||||||||
Sbjct: 1605492 tcggccagatcgccgccga 1605474
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 17      aacagaagccaagccaagcc 36
               ||||||||||||||||||||
Sbjct: 5011513 aacagaagccaagccaagcc 5011494
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>gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete
             sequence
          Length = 107579

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aacagaagccaagccaagcc 36
             ||||||||||||||||||||
Sbjct: 50607 aacagaagccaagccaagcc 50588
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>gb|AC016163.6|AC016163 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete
             sequence
          Length = 89653

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    aacagaagccaagccaagcc 36
             ||||||||||||||||||||
Sbjct: 83816 aacagaagccaagccaagcc 83797
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>gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, complete sequence
          Length = 77730

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    ccatccaaacagaagccaagccaa 33
             ||||| ||||||||||||||||||
Sbjct: 26964 ccatctaaacagaagccaagccaa 26941
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>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0001B06
          Length = 140304

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   aacagaagccaagccaagcc 36
            ||||||||||||||||||||
Sbjct: 4951 aacagaagccaagccaagcc 4932
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 63      ctcggccagatcgccgccga 82
               ||||||||||||||||||||
Sbjct: 2010431 ctcggccagatcgccgccga 2010450
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>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0671B11
          Length = 168372

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aacagaagccaagccaagcc 36
              ||||||||||||||||||||
Sbjct: 111966 aacagaagccaagccaagcc 111947
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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    cggccagatcgccgccgatc 84
             ||||||||||||||||||||
Sbjct: 45055 cggccagatcgccgccgatc 45036
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>dbj|AK059956.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D03, full
           insert sequence
          Length = 917

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  cggccagatcgccgccgatc 84
           ||||||||||||||||||||
Sbjct: 214 cggccagatcgccgccgatc 233
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>dbj|AK058782.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-C11, full
           insert sequence
          Length = 897

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 65  cggccagatcgccgccgatc 84
           ||||||||||||||||||||
Sbjct: 183 cggccagatcgccgccgatc 202
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>ref|XM_480631.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 688

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 atggcgaccaagaggagcg 125
           |||||||||||||||||||
Sbjct: 334 atggcgaccaagaggagcg 352
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>gb|AC009911.11| Drosophila melanogaster clone BACR01N17, complete sequence
          Length = 170190

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 36    ccatcgccactccattccatcca 58
             |||||||| ||||||||||||||
Sbjct: 87591 ccatcgcccctccattccatcca 87613
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>gb|AC112898.5| Rattus norvegicus 2 BAC CH230-157M2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 213379

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 112    gaccaagaggagcgtgggc 130
              |||||||||||||||||||
Sbjct: 137560 gaccaagaggagcgtgggc 137578
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>gb|AC099020.2| Drosophila melanogaster clone BACR30H01, complete sequence
          Length = 155557

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 36   ccatcgccactccattccatcca 58
            |||||||| ||||||||||||||
Sbjct: 3114 ccatcgcccctccattccatcca 3136
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>gb|DQ481669.1| Takifugu rubripes HoxDb gene cluster, complete sequence
          Length = 398525

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    catccaaacagaagccaag 29
             |||||||||||||||||||
Sbjct: 41833 catccaaacagaagccaag 41851
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 65      cggccagatcgccgccgat 83
               |||||||||||||||||||
Sbjct: 1210708 cggccagatcgccgccgat 1210726
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>gb|AC166995.2| Mus musculus BAC clone RP23-255N15 from chromosome 16, complete sequence
          Length = 170106

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 12     atccaaacagaagccaagccaag 34
              |||||||||||||||| ||||||
Sbjct: 165455 atccaaacagaagccatgccaag 165477
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>ref|XM_844173.1| PREDICTED: Canis familiaris similar to Ig lambda chain V-IV region
           X (LOC607488), mRNA
          Length = 444

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 19  cagaagccaagccaagccc 37
           |||||||||||||||||||
Sbjct: 136 cagaagccaagccaagccc 154
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>gb|AC146269.3| Pan troglodytes BAC clone RP43-29B18 from 7, complete sequence
          Length = 178898

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     ccacatccatccaaacaga 22
             |||||||||||||||||||
Sbjct: 53472 ccacatccatccaaacaga 53454
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>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete
             sequence
          Length = 176561

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    ccaagccaagcccatcgcc 43
             |||||||||||||||||||
Sbjct: 41011 ccaagccaagcccatcgcc 41029
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>gb|AC122053.3| Mus musculus BAC clone RP24-463C3 from 3, complete sequence
          Length = 151640

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      cacatccatccaaacagaa 23
              |||||||||||||||||||
Sbjct: 125805 cacatccatccaaacagaa 125787
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>gb|AC005100.2| Homo sapiens BAC clone CTA-351O6 from 7, complete sequence
          Length = 139820

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 4      ccacatccatccaaacaga 22
              |||||||||||||||||||
Sbjct: 128732 ccacatccatccaaacaga 128750
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>gb|AC166831.3| Mus musculus BAC clone RP23-270P14 from chromosome 16, complete sequence
          Length = 230269

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 12     atccaaacagaagccaagccaag 34
              |||||||||||||||| ||||||
Sbjct: 226915 atccaaacagaagccatgccaag 226893
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>emb|AL365277.23| Human DNA sequence from clone RP11-69E11 on chromosome 1 Contains the
             3' end of the MACF1 gene for microtubule-actin
             crosslinking factor 1, the BMP8A gene for bone
             morphogenetic protein 8A, a 3-oxoacid CoA transferase 2
             (OXCT2) pseudogene, a novel gene, a peptidylprolyl
             isomerase E (cyclophilin E) (PPIE) pseudogene, the 3' end
             of the PABPC4 gene for cytoplasmic 4 (inducible form)
             poly(A) binding protein, part of a novel gene and two CpG
             islands, complete sequence
          Length = 115968

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     ccacatccatccaaacaga 22
             |||||||||||||||||||
Sbjct: 97027 ccacatccatccaaacaga 97045
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>ref|XM_782071.1| PREDICTED: Strongylocentrotus purpuratus similar to CG8201-PO,
            isoform O (LOC582100), mRNA
          Length = 1719

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   ccaagcccatcgccactcc 48
            |||||||||||||||||||
Sbjct: 1332 ccaagcccatcgccactcc 1350
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>gb|AC163106.4| Mus musculus BAC clone RP23-278O13 from chromosome 3, complete sequence
          Length = 200512

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     cacatccatccaaacagaa 23
             |||||||||||||||||||
Sbjct: 77249 cacatccatccaaacagaa 77231
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>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence
          Length = 229964

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    agaagccaagccaagccca 38
             |||||||||||||||||||
Sbjct: 79897 agaagccaagccaagccca 79879
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>gb|AC010034.7| Drosophila melanogaster 3L BAC RP98-4A21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 154234

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    aagccaagccaagcccatc 40
             |||||||||||||||||||
Sbjct: 24084 aagccaagccaagcccatc 24102
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>gb|AC091222.3| Drosophila melanogaster 3L BAC RP98-11G24 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 144056

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    aagccaagccaagcccatc 40
             |||||||||||||||||||
Sbjct: 98060 aagccaagccaagcccatc 98078
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 62      cctcggccagatcgccgcc 80
               |||||||||||||||||||
Sbjct: 2179038 cctcggccagatcgccgcc 2179056
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>gb|AC108114.3| Homo sapiens chromosome 5 clone RP11-289K10, complete sequence
          Length = 161812

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    agaagccaagccaagccca 38
             |||||||||||||||||||
Sbjct: 59439 agaagccaagccaagccca 59421
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>dbj|AB218829.1| Bursaphelenchus parvispicularis gene for SSU RNA, ITS1, 5.8S RNA,
            ITS2, and LSU RNA, partial sequence
          Length = 2526

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 18   acagaagccaagccaagcc 36
            |||||||||||||||||||
Sbjct: 1779 acagaagccaagccaagcc 1761
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>gb|AC012625.7| Homo sapiens chromosome 5 clone CTD-2091N23, complete sequence
          Length = 151225

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 27    aagccaagcccatcgccac 45
             |||||||||||||||||||
Sbjct: 16003 aagccaagcccatcgccac 16021
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>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence
          Length = 128683

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    agaagccaagccaagccca 38
             |||||||||||||||||||
Sbjct: 12716 agaagccaagccaagccca 12734
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 73      tcgccgccgatcagatcct 91
               |||||||||||||||||||
Sbjct: 2710714 tcgccgccgatcagatcct 2710696
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>gb|AC129776.3| Mus musculus BAC clone RP23-197A15 from chromosome 16, complete sequence
          Length = 219345

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 12     atccaaacagaagccaagccaag 34
              |||||||||||||||| ||||||
Sbjct: 182784 atccaaacagaagccatgccaag 182762
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 64      tcggccagatcgccgccga 82
               |||||||||||||||||||
Sbjct: 2592425 tcggccagatcgccgccga 2592407
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 142      ggcggatctcaaggggaag 160
                |||||||||||||||||||
Sbjct: 16971347 ggcggatctcaaggggaag 16971329
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 107     atggcgaccaagaggagcg 125
               |||||||||||||||||||
Sbjct: 6307885 atggcgaccaagaggagcg 6307867
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>gb|AC006236.2| Homo sapiens chromosome 17, clone CTB-162E12, complete sequence
          Length = 98300

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 43    cactccattccatccacaa 61
             |||||||||||||||||||
Sbjct: 24996 cactccattccatccacaa 25014
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>dbj|AB179621.1| Viral hemorrhagic septicemia virus genomic RNA, complete genome,
            strain:KRRV9822
          Length = 11158

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   tccaaacagaagccaagcc 31
            |||||||||||||||||||
Sbjct: 1607 tccaaacagaagccaagcc 1625
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 55      tccacaacctcggccagatcgcc 77
               |||||||||||| ||||||||||
Sbjct: 2531162 tccacaacctcgcccagatcgcc 2531184
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 64      tcggccagatcgccgccgatcag 86
               ||||||| |||||||||||||||
Sbjct: 7025071 tcggccacatcgccgccgatcag 7025049



 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 63      ctcggccagatcgccgccg 81
               |||||||||||||||||||
Sbjct: 1445076 ctcggccagatcgccgccg 1445094
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 61      acctcggccagatcgccgc 79
               |||||||||||||||||||
Sbjct: 2383135 acctcggccagatcgccgc 2383117
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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1734_E04
          Length = 101439

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   atggcgaccaagaggagcg 125
             |||||||||||||||||||
Sbjct: 94022 atggcgaccaagaggagcg 94004
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>dbj|AK062824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F06, full
           insert sequence
          Length = 688

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 107 atggcgaccaagaggagcg 125
           |||||||||||||||||||
Sbjct: 334 atggcgaccaagaggagcg 352
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>gb|AE003663.4| Drosophila melanogaster chromosome 2L, section 72 of 83 of the complete
              sequence
          Length = 290667

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 36     ccatcgccactccattccatcca 58
              |||||||| ||||||||||||||
Sbjct: 239464 ccatcgcccctccattccatcca 239442
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>gb|AF030026.1|AF030026 Ovis aries OTCR6 T-cell receptor beta chain mRNA, partial cds
          Length = 414

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  aacagaagccaagccaagc 35
           |||||||||||||||||||
Sbjct: 164 aacagaagccaagccaagc 182
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>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete
              sequence
          Length = 315108

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     aagccaagccaagcccatc 40
              |||||||||||||||||||
Sbjct: 280023 aagccaagccaagcccatc 280041
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>emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06,
             complete sequence
          Length = 100589

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 142   ggcggatctcaaggggaag 160
             |||||||||||||||||||
Sbjct: 95172 ggcggatctcaaggggaag 95154
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>emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0066J23,
             complete sequence
          Length = 156934

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 142   ggcggatctcaaggggaag 160
             |||||||||||||||||||
Sbjct: 26603 ggcggatctcaaggggaag 26585
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>gb|AF035479.1|AF035479 Capra hircus T cell receptor beta chain TCRVB65 (TCRVB65) mRNA,
           partial cds
          Length = 426

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  aacagaagccaagccaagc 35
           |||||||||||||||||||
Sbjct: 164 aacagaagccaagccaagc 182
to top
>gb|U59411.1|CHU59411 Capra hircus T-cell receptor beta chain, variable region, diversity
           region, joining region and constant region (TCRVB51)
           mRNA, partial cds
          Length = 423

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  aacagaagccaagccaagc 35
           |||||||||||||||||||
Sbjct: 164 aacagaagccaagccaagc 182
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>emb|AL929197.6| Mouse DNA sequence from clone RP23-47C18 on chromosome 2, complete
             sequence
          Length = 46845

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    agaagccaagccaagccca 38
             |||||||||||||||||||
Sbjct: 19400 agaagccaagccaagccca 19382
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>emb|AL033526.24|HS110F11 Human DNA sequence from clone RP1-110F11 on chromosome 1p33-34.3,
             complete sequence
          Length = 112339

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     ccacatccatccaaacaga 22
             |||||||||||||||||||
Sbjct: 52730 ccacatccatccaaacaga 52748
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>emb|AJ006346.1|BTA6346 Bos taurus mRNA for T-cell receptor beta chain v-region, clone C53
          Length = 276

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 17  aacagaagccaagccaagc 35
           |||||||||||||||||||
Sbjct: 101 aacagaagccaagccaagc 119
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>dbj|AB060726.1| Viral hemorrhagic septicemia virus gene for P protein, partial cds,
           isolate:#25
          Length = 660

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 13  tccaaacagaagccaagcc 31
           |||||||||||||||||||
Sbjct: 127 tccaaacagaagccaagcc 145
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>gb|U02630.1|HSU02630 Hemorrhagic septicemia virus Makah polymerase-associated M1 protein
           gene, complete cds
          Length = 762

 Score = 38.2 bits (19), Expect = 7.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 13  tccaaacagaagccaagcc 31
           |||||||||||||||||||
Sbjct: 186 tccaaacagaagccaagcc 204


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,106,763
Number of Sequences: 3902068
Number of extensions: 1106763
Number of successful extensions: 87690
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85675
Number of HSP's gapped (non-prelim): 2014
length of query: 162
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 140
effective length of database: 17,147,199,772
effective search space: 2400607968080
effective search space used: 2400607968080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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