ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01d07 |
|---|---|
| Clone Library Name | barley_pub |
>SYD_BURTA (Q2T132) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 32.3 bits (72), Expect = 0.72 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 G + +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 9 GLVTEHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYD_BURS3 (Q39D20) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 600 Score = 32.3 bits (72), Expect = 0.72 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 G + +H +G+ + Q RR HG +I I+ DRE L Q+ C P Sbjct: 9 GLVTEHLLGQTVSLCGWVQRRRDHGGVIFIDLRDREGLVQVVCDP 53
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.4 bits (67), Expect = 2.7 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +1 Query: 88 AAITREPSRPEPSRKISEPFVSY-SPQPQHFPNEGLYKAYLVIQRFKSRISSDPKNITRT 264 AA +PS P P++K+ +P V +P P P L L R +S S P + + Sbjct: 1242 AAFPPQPSLPTPAQKLQDPLVPIAAPMPPSIPQSNLETPPLPPPRSRSS-QSLPSDSSPQ 1300 Query: 265 WSGHDICGRKSYLGFRCGTTPDLAKKLTIMAVDFNDFAMS 384 G++ + CG + ++ T+ + F D ++S Sbjct: 1301 LQQEQPTGQQVKINGACG----VKQEPTLKSDPFEDLSLS 1336
>SYD_BURPS (Q63X93) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURP1 (Q3JVY8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_BURMA (Q62MP0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 598 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRP 316 G + +H +G+ + RR HG +I I+ DRE L Q+ C P Sbjct: 7 GLVTEHLLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDP 51
>SYD_GEOSL (Q74D56) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 594 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -3 Query: 444 GSLKKHKIGELIDEA--FQHRRTHGKIIEINRHDRELLSQIRCRPATEPK 301 G+L K +G+ + RR HG +I I+ DRE L+QI PA P+ Sbjct: 15 GTLTKADVGKQVTLMGWVMRRRDHGGLIFIDLRDREGLAQIVFDPAKAPE 64
>SYD_RALEJ (Q475W2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 602 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -3 Query: 396 QHRRTHGKIIEINRHDRELLSQIRCRP 316 Q RR HG +I I+ DRE L Q+ C P Sbjct: 28 QRRRDHGGVIFIDLRDREGLVQVVCDP 54
>MAT1_COCKU (Q9Y8D3) Mating-type protein MAT-1| Length = 379 Score = 29.6 bits (65), Expect = 4.7 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Frame = +1 Query: 109 SRPEPSRKISEPFVSYSPQPQHFPN---EGLYKAYLVIQRFKSRISSDPKNITRTWSGHD 279 S P +R + +P+ +++P P H PN +GL +L Q ++++ + T + S Sbjct: 276 SPPPMNRYMPDPYSTFAPTPNHSPNPFYDGL-TGFLSEQASIEQVNAATLHNTHSLSDSG 334 Query: 280 ICGRKSYLGFRCGTTPDLAKKLTIMAVDFNDFAMSA 387 + G SY+ T + A + + +D++ F + A Sbjct: 335 LSGDMSYM-----TMDNFATNMPNL-IDYDAFRLGA 364
>CH60_THET8 (Q5SLM2) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -3 Query: 375 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>CH60_THET2 (P61490) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 60) Length = 542 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = -3 Query: 375 KIIEINRHDRELLSQIRCRPATEPKVGFPAADVMARPGPGDVFRVTRNSALE 220 K + I DR+ + ++ A +P+VG AD M + G + V + +LE Sbjct: 130 KALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLE 181
>SYD_DECAR (Q47IE0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 599 Score = 29.3 bits (64), Expect = 6.1 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -3 Query: 390 RRTHGKIIEINRHDRELLSQIRCRP 316 RR HG +I I+ DRE L+Q+ C P Sbjct: 27 RRDHGGVIFIDLRDREGLAQVVCDP 51
>SYD_CHLPN (Q9Z7P2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 584 Score = 29.3 bits (64), Expect = 6.1 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -3 Query: 438 LKKHKIGELIDEA-FQHR-RTHGKIIEINRHDRELLSQIRCRPATEPKV 298 L + IGE + A + HR R HG ++ I+ DR ++QI CR +P++ Sbjct: 11 LTSNHIGENVQLAGWVHRYRNHGGVVFIDLRDRFGITQIVCREDEQPEL 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,792,275 Number of Sequences: 219361 Number of extensions: 1567548 Number of successful extensions: 5029 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5027 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
