Clone Information

BLAST Search Result

Clone Name	baet01d06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ011921.1\|HVU011921 Hordeum vulgare mRNA for putative amino...	632	e-178
2	dbj\|AK101693.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	244	2e-61
3	gb\|AY104698.1\| Zea mays PCO142485 mRNA sequence	198	1e-47
4	gb\|AY107980.1\| Zea mays PCO142484 mRNA sequence	192	7e-46
5	dbj\|AK071182.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	8e-18
6	gb\|AC079356.2\| Oryza sativa (japonica cultivar-group) chromosome...	86	1e-13
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	86	1e-13
8	gb\|BT019074.1\| Zea mays clone Contig647.F mRNA sequence	74	4e-10
9	ref\|NM_189486.1\| Oryza sativa (japonica cultivar-group), predic...	68	3e-08
10	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	3e-08
11	dbj\|AP003298.3\| Oryza sativa (japonica cultivar-group) genomic D...	68	3e-08
12	dbj\|AP003627.3\| Oryza sativa (japonica cultivar-group) genomic D...	68	3e-08
13	dbj\|AB041032.1\| Oryza sativa gene for metallothionein-like prote...	68	3e-08
14	emb\|X94304.1\|STPOM14 S.tuberosum mRNA for POM14 protein	64	4e-07
15	gb\|U43718.1\|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds	50	0.006
16	gb\|BT017732.1\| Zea mays clone EL01N0448C02.c mRNA sequence	46	0.100
17	gb\|AY111174.1\| Zea mays CL27726_1 mRNA sequence	46	0.100
18	emb\|BX248354.1\| Corynebacterium diphtheriae gravis NCTC13129, co...	44	0.39
19	gb\|AY135660.1\| Aquifex pyrophilus hydrogenase small subunit (mbh...	42	1.6
20	ref\|XM_468423.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.6
21	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.6
22	gb\|AC135908.1\| Genomic sequence for Oryza sativa, Nipponbare str...	42	1.6
23	gb\|AY322482.1\| Bos taurus c-Fos (c-fos) mRNA, complete cds	42	1.6
24	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
25	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
26	ref\|NM_182786.1\| Bos taurus murine FBJ osteosarcoma viral (v-fos...	42	1.6
27	dbj\|AP004048.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
28	dbj\|AK063714.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
29	gb\|AY057933.1\| Bromus inermis stress-inducible membrane pore pro...	42	1.6
30	emb\|AL671923.15\| Mouse DNA sequence from clone RP23-322C16 on ch...	42	1.6
31	gb\|AC167702.2\| Reniera sp. JGI-2005 clone JGIBAYC-9C21, complete...	40	6.2
32	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	40	6.2
33	ref\|NM_173493.1\| Homo sapiens PAS domain containing 1 (PASD1), mRNA	40	6.2
34	gb\|AC116677.11\| Mus musculus chromosome 3, clone RP23-111M12, co...	40	6.2
35	emb\|BX546454.7\| Human DNA sequence from clone WI2-86566D3 on chr...	40	6.2
36	emb\|AL513165.12\| Human DNA sequence from clone RP11-613M10 on ch...	40	6.2
37	emb\|AL121952.18\|HSDJ472M2 Human DNA sequence from clone RP3-472M...	40	6.2
38	emb\|AL034407.1\|HS657J8 Human DNA sequence from clone RP4-657J8 o...	40	6.2
39	emb\|AL596264.13\| Mouse DNA sequence from clone RP23-232G8 on chr...	40	6.2
40	dbj\|AK097552.1\| Homo sapiens cDNA FLJ40233 fis, clone TESTI20230...	40	6.2
41	gb\|AY950802.1\| Bacteriophage SH1, complete genome	40	6.2
42	dbj\|AP007255.1\| Magnetospirillum magneticum AMB-1 DNA, complete ...	40	6.2
43	gb\|AF003627.3\| Homo sapiens chromosome X multiple clones map q28...	40	6.2
44	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	6.2
45	dbj\|AB180670.1\| Plutella xylostella mRNA for ribosomal protein S...	40	6.2
46	gb\|AE015927.1\| Clostridium tetani E88, complete genome	40	6.2

>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel
           protein
          Length = 674

 Score =  632 bits (319), Expect = e-178
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 139 gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 60

                                                                       
Query: 199 cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 120

                                                                       
Query: 259 gcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgact 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgact 180

                                                                       
Query: 319 gcctccacagaggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgca 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcctccacagaggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgca 240

                                                                       
Query: 379 aggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtatggagtgg 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtatggagtgg 300

                              
Query: 439 aaagggtccgtggtgaccg 457
           |||||||||||||||||||
Sbjct: 301 aaagggtccgtggtgaccg 319

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>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full
           insert sequence
          Length = 697

 Score =  244 bits (123), Expect = 2e-61
 Identities = 213/243 (87%)
 Strand = Plus / Plus

                                                                       
Query: 210 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
           ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 128 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 187

                                                                       
Query: 270 atcggcgccgtcggcgcctgcagggtggtcgccgaggacgccttcgactgcctccacaga 329
           |||||||||||||| || |||| ||| | |||||||||| | ||||||||||||||||||
Sbjct: 188 atcggcgccgtcggggcgtgcaaggtcgccgccgaggacacattcgactgcctccacaga 247

                                                                       
Query: 330 ggggatatctcgaagcgccagcttgaagagacgctgaagaaaatgtgcaaggagggtgca 389
           |||||| | || |||| | |||||||  | | ||||||||||||||||||||||||||| 
Sbjct: 248 ggggatgtttcaaagcacaagcttgagcatatgctgaagaaaatgtgcaaggagggtgcc 307

                                                                       
Query: 390 tattggggtgctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgt 449
           ||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||| | |||
Sbjct: 308 tattggggtactgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgt 367

              
Query: 450 ggt 452
           |||
Sbjct: 368 ggt 370

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>gb|AY104698.1| Zea mays PCO142485 mRNA sequence
          Length = 678

 Score =  198 bits (100), Expect = 1e-47
 Identities = 184/212 (86%)
 Strand = Plus / Plus

                                                                       
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  
Sbjct: 208 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggct 267

                                                                       
Query: 300 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 359
           ||||||||  ||||||| ||||||||||| |||||| | ||||||| | || ||||  | 
Sbjct: 268 gccgaggagaccttcgagtgcctccacaggggggatgtttcgaagcacaaggttgagcat 327

                                                                       
Query: 360 acgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgta 419
            | |||| ||| |||||||||||||| |||||||||||  |||||||||| || ||||| 
Sbjct: 328 gccctgaggaagatgtgcaaggagggcgcatattggggcactgttgctggagtttatgtg 387

                                           
Query: 420 ggcatggagtatggagtggaaagggtccgtgg 451
           ||||||| ||| || |||||||||||||||||
Sbjct: 388 ggcatggtgtacggcgtggaaagggtccgtgg 419

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>gb|AY107980.1| Zea mays PCO142484 mRNA sequence
          Length = 690

 Score =  192 bits (97), Expect = 7e-46
 Identities = 181/209 (86%)
 Strand = Plus / Plus

                                                                       
Query: 243 aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtcgcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||
Sbjct: 94  aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcaaggtggcggcc 153

                                                                       
Query: 303 gaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagagacg 362
           |||||  ||||||||||||||||||| |||||| | || |||||| || ||||  |  | 
Sbjct: 154 gaggagaccttcgactgcctccacaggggggatgtttcaaagcgcaaggttgagcatgcc 213

                                                                       
Query: 363 ctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggc 422
           |||||||| |||||||||||||| |||||||||||  |||||||||| || || || |||
Sbjct: 214 ctgaagaagatgtgcaaggagggcgcatattgggggactgttgctggcgtctacgtgggc 273

                                        
Query: 423 atggagtatggagtggaaagggtccgtgg 451
            ||| |||||| ||||| |||||||||||
Sbjct: 274 gtggtgtatggcgtggagagggtccgtgg 302

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>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full
           insert sequence
          Length = 784

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 175/214 (81%), Gaps = 2/214 (0%)
 Strand = Plus / Plus

                                                                       
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgcagggtggtc 299
           |||||||||||||||||||||||||||||||| ||||| || || || |||| ||| |  
Sbjct: 111 ctcaaccgcaccgtcgacggcttcctcaagattggcgctgttggggcttgcaaggtcgct 170

                                                                       
Query: 300 gccgaggacgccttcgactgcctccacagaggggatatctcgaagcgccagcttgaagag 359
           ||||| ||  ||||||| ||||| |||||||||||  |||| |||| | |  ||| ||||
Sbjct: 171 gccgaagagaccttcgagtgccttcacagaggggacgtctcaaagcacaaagttg-agag 229

                                                                       
Query: 360 -acgctgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgt 418
             | || |||||||| |||||||| || |||||||||||| || |||| || || |||||
Sbjct: 230 tgcactcaagaaaatttgcaaggaaggcgcatattggggtactattgcgggtgtatatgt 289

                                             
Query: 419 aggcatggagtatggagtggaaagggtccgtggt 452
            ||||||||||||||| | |||||  ||||||||
Sbjct: 290 gggcatggagtatggaatcgaaagaatccgtggt 323

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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 210   gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
             ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 86521 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 86580

                        
Query: 270   atcggcgccgt 280
             |||||||||||
Sbjct: 86581 atcggcgccgt 86591



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 400   ctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgtggt 452
             ||||||||||||||||||| ||||||||||| |||||||| ||| | ||||||
Sbjct: 88082 ctgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgtggt 88134



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                  
Query: 362   gctgaagaaaatgtgcaaggagggtgcatattggggt 398
             ||||||||||||||||||||||||||| |||||||||
Sbjct: 87908 gctgaagaaaatgtgcaaggagggtgcctattggggt 87944



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 299   cgccgaggacgccttcgactgcctccacagagg 331
             |||||||||| | ||||||||||||||||||||
Sbjct: 86704 cgccgaggacacattcgactgcctccacagagg 86736

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                          
Query: 210    gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
              ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 569122 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 569181

                         
Query: 270    atcggcgccgt 280
              |||||||||||
Sbjct: 569182 atcggcgccgt 569192



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                   
Query: 400    ctgttgctggggtgtatgtaggcatggagtatggagtggaaagggtccgtggt 452
              ||||||||||||||||||| ||||||||||| |||||||| ||| | ||||||
Sbjct: 570683 ctgttgctggggtgtatgtgggcatggagtacggagtggagaggattcgtggt 570735



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                   
Query: 362    gctgaagaaaatgtgcaaggagggtgcatattggggt 398
              ||||||||||||||||||||||||||| |||||||||
Sbjct: 570509 gctgaagaaaatgtgcaaggagggtgcctattggggt 570545



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 299    cgccgaggacgccttcgactgcctccacagagg 331
              |||||||||| | ||||||||||||||||||||
Sbjct: 569305 cgccgaggacacattcgactgcctccacagagg 569337

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>gb|BT019074.1| Zea mays clone Contig647.F mRNA sequence
          Length = 774

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 372 atgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggcatggagtat 431
           |||||||||| ||| |||||||||||  ||||||||||||| ||||| ||||||| ||| 
Sbjct: 432 atgtgcaaggggggggcatattggggccctgttgctggggtttatgtgggcatggtgtag 373

                            
Query: 432 ggagtggaaagggtccg 448
           || | ||||||||||||
Sbjct: 372 gggggggaaagggtccg 356

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>ref|NM_189486.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 255

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 76  ctcaaccgcaccgtcgacggcttcctcaagattggcgc 113

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 240      ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
                |||||||||||||||||||||||||||||||| |||||
Sbjct: 43036666 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 43036703



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 366      aagaaaatgtgcaaggagggtgcatattggggt 398
                |||||||| |||||||| || ||||||||||||
Sbjct: 43037346 aagaaaatttgcaaggaaggcgcatattggggt 43037378

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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698H10
          Length = 153449

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 240    ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
              |||||||||||||||||||||||||||||||| |||||
Sbjct: 137545 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 137582



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 366    aagaaaatgtgcaaggagggtgcatattggggt 398
              |||||||| |||||||| || ||||||||||||
Sbjct: 138225 aagaaaatttgcaaggaaggcgcatattggggt 138257

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>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0459B04
          Length = 142475

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 240   ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
             |||||||||||||||||||||||||||||||| |||||
Sbjct: 33695 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 33732



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 366   aagaaaatgtgcaaggagggtgcatattggggt 398
             |||||||| |||||||| || ||||||||||||
Sbjct: 34375 aagaaaatttgcaaggaaggcgcatattggggt 34407

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>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds
          Length = 4072

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 102 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 139



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 366 aagaaaatgtgcaaggagggtgcatattggggt 398
           |||||||| |||||||| || ||||||||||||
Sbjct: 783 aagaaaatttgcaaggaaggcgcatattggggt 815

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>emb|X94304.1|STPOM14 S.tuberosum mRNA for POM14 protein
          Length = 537

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 364 tgaagaaaatgtgcaaggagggtgcatattggggtgctgttgctggggtgtatgtaggca 423
           ||||||||||||| || || ||||| ||||||||  ||||||||||||| ||||  || |
Sbjct: 206 tgaagaaaatgtgtaaagaaggtgcttattgggggactgttgctggggtatatgctggaa 265

                       
Query: 424 tggagtatggag 435
           ||||||||||||
Sbjct: 266 tggagtatggag 277

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>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds
          Length = 777

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| |||||||||||||||||
Sbjct: 654 tcgacctcggccacccgctgctcaaccgc 626

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>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence
          Length = 868

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 222 gacctcggcaacccgctgctcaaccgc 248
           ||||||||| |||||||||||||||||
Sbjct: 170 gacctcggccacccgctgctcaaccgc 196

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>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence
          Length = 802

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 222 gacctcggcaacccgctgctcaaccgc 248
           ||||||||| |||||||||||||||||
Sbjct: 648 gacctcggccacccgctgctcaaccgc 622

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>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             1/8
          Length = 348517

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 221   cgacctcggcaacccgctgctcaacc 246
             ||||| ||||||||||||||||||||
Sbjct: 48097 cgaccccggcaacccgctgctcaacc 48072

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>gb|AY135660.1| Aquifex pyrophilus hydrogenase small subunit (mbhS1) gene, partial
            cds; and hypothetical protein, phosphatidate
            cytidylytransferase (cds), undecaprenyl pyrophosphate
            (yaes), hypothetical protein,
            3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
            (kdsA), molybdenum transport system permease (modB),
            riboflavin synthase beta subunit (ribH), transcription
            termination factor (nusB), hypothetical protein, NADH
            dehydrogenase (nuo), cytochrome c peroxidase (ccpR), heat
            shock protein 70 (dnaK), and hypothetical protein genes,
            complete cds
          Length = 12698

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 160  aggaagggaggatgcctaccg 180
            |||||||||||||||||||||
Sbjct: 6318 aggaagggaggatgcctaccg 6298

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>ref|XM_468423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 ctcaagatcggcgccgtcggc 284
           |||||||||||||||||||||
Sbjct: 664 ctcaagatcggcgccgtcggc 684

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 220      tcgacctcggcaacccgctgctcaaccgc 248
                ||||||||||| ||||||| |||||||||
Sbjct: 10820522 tcgacctcggccacccgctcctcaaccgc 10820550

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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 220   tcgacctcggcaacccgctgctcaaccgc 248
             ||||||||||| ||||||| |||||||||
Sbjct: 34365 tcgacctcggccacccgctcctcaaccgc 34337

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>gb|AY322482.1| Bos taurus c-Fos (c-fos) mRNA, complete cds
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ccactgcctcccctctctgcc 23
            |||||||||||||||||||||
Sbjct: 1307 ccactgcctcccctctctgcc 1287

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 220      tcgacctcggcaacccgctgctcaaccgc 248
                ||||||||||| ||||||| |||||||||
Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgc 10818651

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 264      ctcaagatcggcgccgtcggc 284
                |||||||||||||||||||||
Sbjct: 35153080 ctcaagatcggcgccgtcggc 35153100

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>ref|NM_182786.1| Bos taurus murine FBJ osteosarcoma viral (v-fos) oncogene homolog
            (FOS), mRNA
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ccactgcctcccctctctgcc 23
            |||||||||||||||||||||
Sbjct: 1307 ccactgcctcccctctctgcc 1287

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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1202_E07
          Length = 145014

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   ctcaagatcggcgccgtcggc 284
             |||||||||||||||||||||
Sbjct: 48436 ctcaagatcggcgccgtcggc 48456

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>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full
           insert sequence
          Length = 839

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| ||||||| |||||||||
Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206

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>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA,
           complete cds
          Length = 819

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| ||||||| |||||||||
Sbjct: 141 tcgacctcggccacccgctcctcaaccgc 169

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>emb|AL671923.15| Mouse DNA sequence from clone RP23-322C16 on chromosome X, complete
             sequence
          Length = 213730

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   aaatgtgcaaggagggtgcat 390
             |||||||||||||||||||||
Sbjct: 23428 aaatgtgcaaggagggtgcat 23448

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>gb|AC167702.2| Reniera sp. JGI-2005 clone JGIBAYC-9C21, complete sequence
          Length = 38590

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gtatccagctccagtacaca 57
            ||||||||||||||||||||
Sbjct: 8852 gtatccagctccagtacaca 8871

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     ggtggacgtggccatcgacc 225
               ||||||||||||||||||||
Sbjct: 3306342 ggtggacgtggccatcgacc 3306323

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>ref|NM_173493.1| Homo sapiens PAS domain containing 1 (PASD1), mRNA
          Length = 3161

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 6  ctgcctcccctctctgcctcgccc 29
          |||||||||||||||||| |||||
Sbjct: 16 ctgcctcccctctctgccacgccc 39

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>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence
          Length = 214206

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cctcccctctctgcctcgccctat 32
             ||||||||||||||||| ||||||
Sbjct: 88659 cctcccctctctgcctccccctat 88636

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>emb|BX546454.7| Human DNA sequence from clone WI2-86566D3 on chromosome X Contains the
             5' end of the gene for a novel protein, complete sequence
          Length = 38572

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     ctgcctcccctctctgcctcgccc 29
             |||||||||||||||||| |||||
Sbjct: 27356 ctgcctcccctctctgccacgccc 27379

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>emb|AL513165.12| Human DNA sequence from clone RP11-613M10 on chromosome 9 Contains part
             of a novel gene, the FBXO10 gene (FBX10) for F-box only
             protein 10, two novel genes, a RAB1B (member RAS oncogene
             family) pseudogene the 5' end of a novel gene (KIAA0967)
             and three CpG islands, complete sequence
          Length = 194976

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     cactgcctcccctctctgcc 23
             ||||||||||||||||||||
Sbjct: 12044 cactgcctcccctctctgcc 12025

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>emb|AL121952.18|HSDJ472M2 Human DNA sequence from clone RP3-472M2 on chromosome 6q25.1-26 Contains
              the 3' end of the gene for KIAA1116 and a ribosomal protein
              L17 (60S ribosomal protein L17) (RPL17)(rpL17) pseudogene,
              complete sequence
          Length = 107506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 370    aaatgtgcaaggagggtgcatatt 393
              ||||| ||||||||||||||||||
Sbjct: 103540 aaatgagcaaggagggtgcatatt 103563

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>emb|AL034407.1|HS657J8 Human DNA sequence from clone RP4-657J8 on chromosome Xq26.1-26.3,
            complete sequence
          Length = 98954

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 428  gtatggagtggaaagggtcc 447
            ||||||||||||||||||||
Sbjct: 2171 gtatggagtggaaagggtcc 2190

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>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 175724

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     tacatagtatccagctccag 51
              ||||||||||||||||||||
Sbjct: 121493 tacatagtatccagctccag 121474

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>dbj|AK097552.1| Homo sapiens cDNA FLJ40233 fis, clone TESTI2023085, weakly
          similar to CIRCADIAN LOCOMOTER OUTPUT CYCLES KAPUT
          PROTEIN
          Length = 3161

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 6  ctgcctcccctctctgcctcgccc 29
          |||||||||||||||||| |||||
Sbjct: 16 ctgcctcccctctctgccacgccc 39

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>gb|AY950802.1| Bacteriophage SH1, complete genome
          Length = 30889

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 299   cgccgaggacgccttcgact 318
             ||||||||||||||||||||
Sbjct: 13870 cgccgaggacgccttcgact 13889

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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     ggtggacgtggccatcgacc 225
               ||||||||||||||||||||
Sbjct: 4898714 ggtggacgtggccatcgacc 4898695

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>gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 184788

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      ctgcctcccctctctgcctcgccc 29
              |||||||||||||||||| |||||
Sbjct: 172314 ctgcctcccctctctgccacgccc 172337

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 272     cggcgccgtcggcgcctgca 291
               ||||||||||||||||||||
Sbjct: 1296821 cggcgccgtcggcgcctgca 1296840

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>dbj|AB180670.1| Plutella xylostella mRNA for ribosomal protein S14, complete cds
          Length = 547

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 agggtggtcgccgaggacgc 310
           ||||||||||||||||||||
Sbjct: 451 agggtggtcgccgaggacgc 470

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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 355     aagagacgctgaagaaaatg 374
               ||||||||||||||||||||
Sbjct: 2453649 aagagacgctgaagaaaatg 2453630


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,039,445
Number of Sequences: 3902068
Number of extensions: 3039445
Number of successful extensions: 63901
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63461
Number of HSP's gapped (non-prelim): 437
length of query: 457
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 435
effective length of database: 17,147,199,772
effective search space: 7459031900820
effective search space used: 7459031900820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result