ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet01b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2) 29 2.7
2GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 pre... 29 3.5
3ACDB_METKA (Q8TXF4) Acetyl-CoA decarbonylase/synthase complex be... 28 4.6
4GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge... 28 6.0
5Y1614_METJA (Q59009) Hypothetical protein MJ1614 28 7.8
6PITX3_RAT (P81062) Pituitary homeobox 3 (Homeobox protein PTX3) 28 7.8
7PITX3_MOUSE (O35160) Pituitary homeobox 3 (Homeobox protein PITX3) 28 7.8
8PITX3_HUMAN (O75364) Pituitary homeobox 3 (Homeobox protein PITX3) 28 7.8

>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)|
          Length = 203

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
           G PR   T   FDPA    VG++      PGT
Sbjct: 145 GYPRHAETGVAFDPARHEVVGVVQDPDAPPGT 176



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>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable|
            G-protein coupled receptor 158-like 1)
          Length = 2367

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -3

Query: 283  PXAPILRKPST--VRLSSGL--PRSMATSTLFDPAASPAVGILPSSRLAP 146
            P  PI  + ST  + LS GL  PR ++ ++   PA  PA+   P+  LAP
Sbjct: 929  PHPPIRHQVSTPILALSGGLGEPRMLSPTSTLAPALLPALAPTPAPALAP 978



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>ACDB_METKA (Q8TXF4) Acetyl-CoA decarbonylase/synthase complex beta subunit (EC|
           2.3.1.-) (ACDS complex beta subunit) (ACDS complex
           acyltransferase)
          Length = 467

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = -2

Query: 284 AXGADLEEAVDGAVEQRVAE----VDGHVHL 204
           A G +LEE V+G +E+R+ E    V+G +HL
Sbjct: 77  AAGEELEEDVEGVLERRIHEFCNYVEGFMHL 107



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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 289  QAPXAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
            Q P   IL+  +      G P +  TST   P  SPA  +L S +   GT
Sbjct: 914  QVPSGIILQNKA-----GGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGT 958



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>Y1614_METJA (Q59009) Hypothetical protein MJ1614|
          Length = 251

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 168 RMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKI 272
           R P   +     ++ + +D+G+  LN+ ++ FLKI
Sbjct: 150 RNPDKEIIENLGELKITLDIGHSFLNKNIENFLKI 184



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>PITX3_RAT (P81062) Pituitary homeobox 3 (Homeobox protein PTX3)|
          Length = 302

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 289 QAPXAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
           +A   P+  K      +S     +A+  +F P +S A  ++PS+  APGT
Sbjct: 159 KALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGT 208



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>PITX3_MOUSE (O35160) Pituitary homeobox 3 (Homeobox protein PITX3)|
          Length = 302

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 289 QAPXAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
           +A   P+  K      +S     +A+  +F P +S A  ++PS+  APGT
Sbjct: 159 KALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGT 208



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>PITX3_HUMAN (O75364) Pituitary homeobox 3 (Homeobox protein PITX3)|
          Length = 302

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 289 QAPXAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140
           +A   P+  K      +S     +A+  +F P +S A  ++PS+  APGT
Sbjct: 159 KALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGT 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,626,758
Number of Sequences: 219361
Number of extensions: 321732
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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