>emb|AJ011921.1|HVU011921 Hordeum vulgare mRNA for putative amino acid selective channel
           protein
          Length = 674

 Score =  297 bits (150), Expect = 1e-77
 Identities = 154/156 (98%)
 Strand = Plus / Plus

                                                                       
Query: 139 gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcgtgccgggtgccagacgagaggaagggaggatgcctaccgcggggctggcggccgggt 60

                                                                       
Query: 199 cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaacaaggtggacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacg 120

                                               
Query: 259 gcttcctcaagatcggcgccgncggcgcctgcnggg 294
           ||||||||||||||||||||| |||||||||| |||
Sbjct: 121 gcttcctcaagatcggcgccgtcggcgcctgcaggg 156

>gb|AY104698.1| Zea mays PCO142485 mRNA sequence
          Length = 678

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 50/51 (98%)
 Strand = Plus / Plus

                                                              
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgncggcgcctgc 290
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 208 ctcaaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgc 258

>gb|AY107980.1| Zea mays PCO142484 mRNA sequence
          Length = 690

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                           
Query: 243 aaccgcaccgtcgacggcttcctcaagatcggcgccgncggcgcctgc 290
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 94  aaccgcaccgtcgacggcttcctcaagatcggcgccgtcggcgcctgc 141

>dbj|AK101693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059M19, full
           insert sequence
          Length = 697

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                       
Query: 210 gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
           ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 128 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 187

                         
Query: 270 atcggcgccgncgg 283
           |||||||||| |||
Sbjct: 188 atcggcgccgtcgg 201

>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 210   gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
             ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 86521 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 86580

                       
Query: 270   atcggcgccg 279
             ||||||||||
Sbjct: 86581 atcggcgccg 86590

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                          
Query: 210    gacgtggccatcgacctcggcaacccgctgctcaaccgcaccgtcgacggcttcctcaag 269
              ||||| ||||||||| | || |||||  | ||||||||||||||||||||||||||||||
Sbjct: 569122 gacgtcgccatcgacatggggaaccccttcctcaaccgcaccgtcgacggcttcctcaag 569181

                        
Query: 270    atcggcgccg 279
              ||||||||||
Sbjct: 569182 atcggcgccg 569191

>ref|NM_189486.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 255

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 76  ctcaaccgcaccgtcgacggcttcctcaagattggcgc 113

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 240      ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
                |||||||||||||||||||||||||||||||| |||||
Sbjct: 43036666 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 43036703

>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698H10
          Length = 153449

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 240    ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
              |||||||||||||||||||||||||||||||| |||||
Sbjct: 137545 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 137582

>dbj|AP003627.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0459B04
          Length = 142475

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 240   ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
             |||||||||||||||||||||||||||||||| |||||
Sbjct: 33695 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 33732

>dbj|AB041032.1| Oryza sativa gene for metallothionein-like protein, complete cds
          Length = 4072

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 102 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 139

>dbj|AK071182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082P21, full
           insert sequence
          Length = 784

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 240 ctcaaccgcaccgtcgacggcttcctcaagatcggcgc 277
           |||||||||||||||||||||||||||||||| |||||
Sbjct: 111 ctcaaccgcaccgtcgacggcttcctcaagattggcgc 148

>gb|U43718.1|TAU43718 Triticum aestivum pMA1951 mRNA, partial cds
          Length = 777

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| |||||||||||||||||
Sbjct: 654 tcgacctcggccacccgctgctcaaccgc 626

>gb|BT017732.1| Zea mays clone EL01N0448C02.c mRNA sequence
          Length = 868

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 222 gacctcggcaacccgctgctcaaccgc 248
           ||||||||| |||||||||||||||||
Sbjct: 170 gacctcggccacccgctgctcaaccgc 196

>gb|AY111174.1| Zea mays CL27726_1 mRNA sequence
          Length = 802

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 222 gacctcggcaacccgctgctcaaccgc 248
           ||||||||| |||||||||||||||||
Sbjct: 648 gacctcggccacccgctgctcaaccgc 622

>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             1/8
          Length = 348517

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 221   cgacctcggcaacccgctgctcaacc 246
             ||||| ||||||||||||||||||||
Sbjct: 48097 cgaccccggcaacccgctgctcaacc 48072

>gb|AY135660.1| Aquifex pyrophilus hydrogenase small subunit (mbhS1) gene, partial
            cds; and hypothetical protein, phosphatidate
            cytidylytransferase (cds), undecaprenyl pyrophosphate
            (yaes), hypothetical protein,
            3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
            (kdsA), molybdenum transport system permease (modB),
            riboflavin synthase beta subunit (ribH), transcription
            termination factor (nusB), hypothetical protein, NADH
            dehydrogenase (nuo), cytochrome c peroxidase (ccpR), heat
            shock protein 70 (dnaK), and hypothetical protein genes,
            complete cds
          Length = 12698

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 160  aggaagggaggatgcctaccg 180
            |||||||||||||||||||||
Sbjct: 6318 aggaagggaggatgcctaccg 6298

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 220      tcgacctcggcaacccgctgctcaaccgc 248
                ||||||||||| ||||||| |||||||||
Sbjct: 10820522 tcgacctcggccacccgctcctcaaccgc 10820550

>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 220   tcgacctcggcaacccgctgctcaaccgc 248
             ||||||||||| ||||||| |||||||||
Sbjct: 34365 tcgacctcggccacccgctcctcaaccgc 34337

>gb|AY322482.1| Bos taurus c-Fos (c-fos) mRNA, complete cds
          Length = 1443

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ccactgcctcccctctctgcc 23
            |||||||||||||||||||||
Sbjct: 1307 ccactgcctcccctctctgcc 1287

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 220      tcgacctcggcaacccgctgctcaaccgc 248
                ||||||||||| ||||||| |||||||||
Sbjct: 10818623 tcgacctcggccacccgctcctcaaccgc 10818651

>ref|NM_182786.1| Bos taurus murine FBJ osteosarcoma viral (v-fos) oncogene homolog
            (FOS), mRNA
          Length = 1443

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ccactgcctcccctctctgcc 23
            |||||||||||||||||||||
Sbjct: 1307 ccactgcctcccctctctgcc 1287

>dbj|AK063714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C03, full
           insert sequence
          Length = 839

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| ||||||| |||||||||
Sbjct: 178 tcgacctcggccacccgctcctcaaccgc 206

>gb|AY057933.1| Bromus inermis stress-inducible membrane pore protein (BG15) mRNA,
           complete cds
          Length = 819

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 220 tcgacctcggcaacccgctgctcaaccgc 248
           ||||||||||| ||||||| |||||||||
Sbjct: 141 tcgacctcggccacccgctcctcaaccgc 169

>gb|AC167702.2| Reniera sp. JGI-2005 clone JGIBAYC-9C21, complete sequence
          Length = 38590

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gtatccagctccagtacaca 57
            ||||||||||||||||||||
Sbjct: 8852 gtatccagctccagtacaca 8871

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     ggtggacgtggccatcgacc 225
               ||||||||||||||||||||
Sbjct: 3306342 ggtggacgtggccatcgacc 3306323

>ref|NM_173493.1| Homo sapiens PAS domain containing 1 (PASD1), mRNA
          Length = 3161

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 6  ctgcctcccctctctgcctcgccc 29
          |||||||||||||||||| |||||
Sbjct: 16 ctgcctcccctctctgccacgccc 39

>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 263   cctcaagatcggcgccgncggcg 285
             ||||||||||||||||| |||||
Sbjct: 21083 cctcaagatcggcgccggcggcg 21105

>gb|AC116677.11| Mus musculus chromosome 3, clone RP23-111M12, complete sequence
          Length = 214206

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     cctcccctctctgcctcgccctat 32
             ||||||||||||||||| ||||||
Sbjct: 88659 cctcccctctctgcctccccctat 88636

>emb|BX546454.7| Human DNA sequence from clone WI2-86566D3 on chromosome X Contains the
             5' end of the gene for a novel protein, complete sequence
          Length = 38572

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     ctgcctcccctctctgcctcgccc 29
             |||||||||||||||||| |||||
Sbjct: 27356 ctgcctcccctctctgccacgccc 27379

>emb|AL513165.12| Human DNA sequence from clone RP11-613M10 on chromosome 9 Contains part
             of a novel gene, the FBXO10 gene (FBX10) for F-box only
             protein 10, two novel genes, a RAB1B (member RAS oncogene
             family) pseudogene the 5' end of a novel gene (KIAA0967)
             and three CpG islands, complete sequence
          Length = 194976

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     cactgcctcccctctctgcc 23
             ||||||||||||||||||||
Sbjct: 12044 cactgcctcccctctctgcc 12025

>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 175724

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     tacatagtatccagctccag 51
              ||||||||||||||||||||
Sbjct: 121493 tacatagtatccagctccag 121474

>dbj|AK097552.1| Homo sapiens cDNA FLJ40233 fis, clone TESTI2023085, weakly
          similar to CIRCADIAN LOCOMOTER OUTPUT CYCLES KAPUT
          PROTEIN
          Length = 3161

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 6  ctgcctcccctctctgcctcgccc 29
          |||||||||||||||||| |||||
Sbjct: 16 ctgcctcccctctctgccacgccc 39

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     ggtggacgtggccatcgacc 225
               ||||||||||||||||||||
Sbjct: 4898714 ggtggacgtggccatcgacc 4898695

>gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 184788

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 6      ctgcctcccctctctgcctcgccc 29
              |||||||||||||||||| |||||
Sbjct: 172314 ctgcctcccctctctgccacgccc 172337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,560,179
Number of Sequences: 3902068
Number of extensions: 1560179
Number of successful extensions: 36303
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36122
Number of HSP's gapped (non-prelim): 181
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)