ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 tggcggttgatttcaatgattt 374 |||||||||||||||||||||| Sbjct: 297379 tggcggttgatttcaatgattt 297400
>ref|XM_466744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1574 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 238 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 286
>ref|XM_466743.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1371 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 250 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 298
>ref|XM_507509.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1586 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 250 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 298
>ref|XM_507508.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1631 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 251 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 299
>ref|XM_507507.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507506.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507505.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507504.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507503.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507502.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507501.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507500.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507499.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507498.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1592 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_507497.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1624 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>ref|XM_506867.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1792_D02.5-2 mRNA Length = 1590 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 257 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 305
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 24392454 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 24392502
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 20660 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 20708
>dbj|AK109334.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B09, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK119668.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-H04, full insert sequence Length = 1631 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 251 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 299
>dbj|AK106124.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F02, full insert sequence Length = 1586 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 250 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 298
>dbj|AK106204.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F12, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104569.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G04, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104563.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D08, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104662.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-E08, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104632.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-C05, full insert sequence Length = 1624 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104455.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A09, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104383.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C11, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104310.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H06, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E07, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK104284.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A03, full insert sequence Length = 1574 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 238 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 286
>dbj|AK103939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G07, full insert sequence Length = 1589 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 253 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 301
>dbj|AK064829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F09, full insert sequence Length = 1591 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 258 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 306
>dbj|AK060972.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D12, full insert sequence Length = 1371 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 241 gacccgaaaaacatcaccaggacctggtctggccatgacatctgcggca 289 ||||| || ||||||||| |||||| | ||||||||||||||||||| Sbjct: 250 gaccccaagaacatcaccgccacctggaccggccatgacatctgcggca 298
>ref|NM_122516.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT5G26150 mRNA, complete cds Length = 2112 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 catgacatctgcggcaggaa 293 |||||||||||||||||||| Sbjct: 1743 catgacatctgcggcaggaa 1762
>gb|AC123049.4| Mus musculus BAC clone RP24-360B3 from chromosome 5, complete sequence Length = 166292 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cagccacaacacttcccaaa 182 |||||||||||||||||||| Sbjct: 102651 cagccacaacacttcccaaa 102632
>emb|BX470150.13| Zebrafish DNA sequence from clone DKEY-164K14 in linkage group 23, complete sequence Length = 209342 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 atcagtgagccttttgtatc 152 |||||||||||||||||||| Sbjct: 183089 atcagtgagccttttgtatc 183070
>gb|AC087865.8| Homo sapiens 12 BAC RP11-66D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169045 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aaccctgtctcttgttgctg 91 |||||||||||||||||||| Sbjct: 93284 aaccctgtctcttgttgctg 93265
>gb|BC036224.1| Homo sapiens cDNA clone IMAGE:5272313 Length = 1922 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 agatcagtgagccttttgta 150 |||||||||||||||||||| Sbjct: 1004 agatcagtgagccttttgta 1023
>gb|AC091516.8| Homo sapiens 12q BAC RP11-474L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158998 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 aaccctgtctcttgttgctg 91 |||||||||||||||||||| Sbjct: 48681 aaccctgtctcttgttgctg 48700
>dbj|AK221251.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-07-D22 Length = 710 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 catgacatctgcggcaggaa 293 |||||||||||||||||||| Sbjct: 269 catgacatctgcggcaggaa 250
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gctggaaggcttcatcgatc 412 |||||||||||||||||||| Sbjct: 2851268 gctggaaggcttcatcgatc 2851287
>gb|AC099778.2| Homo sapiens chromosome 3 clone RP11-708J19, complete sequence Length = 212775 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 agatcagtgagccttttgta 150 |||||||||||||||||||| Sbjct: 24514 agatcagtgagccttttgta 24495
>dbj|AK105020.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A05, full insert sequence Length = 1329 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 262 acctggtctggccatgacatctgcggca 289 |||||| | ||||||||||||||||||| Sbjct: 14 acctggaccggccatgacatctgcggca 41
>dbj|AK061687.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B02, full insert sequence Length = 1323 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 262 acctggtctggccatgacatctgcggca 289 |||||| | ||||||||||||||||||| Sbjct: 8 acctggaccggccatgacatctgcggca 35
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 Length = 127053 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 catgacatctgcggcaggaa 293 |||||||||||||||||||| Sbjct: 8301 catgacatctgcggcaggaa 8320 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,647,125 Number of Sequences: 3902068 Number of extensions: 3647125 Number of successful extensions: 54474 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54378 Number of HSP's gapped (non-prelim): 96 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
