ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet01b04 |
|---|---|
| Clone Library Name | barley_pub |
>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) Length = 727 Score = 32.7 bits (73), Expect = 0.39 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = -2 Query: 433 PYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257 P P YTP+ AP Y PS ++ S + + SP + A S P P R P Sbjct: 431 PSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPP 489
>PTP99_DROME (P35832) Tyrosine-protein phosphatase 99A precursor (EC 3.1.3.48)| (Receptor-linked protein-tyrosine phosphatase 99A) (DPTP99A) Length = 1301 Score = 31.6 bits (70), Expect = 0.87 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Frame = -2 Query: 310 ASSATTLQAPTAPILRKPSTVRLSSGLPRSM----------ATSTLFDPAASPAVGILPS 161 +SS+TT P+ P + P T++LSS P + A S + AS + G P+ Sbjct: 1125 SSSSTTPPTPSTPTPQPPQTIQLSSHSPSDLSHQISSTVANAASPVTPATASASAGATPT 1184 Query: 160 SRLAP 146 + + P Sbjct: 1185 TPMTP 1189
>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced| PDZ-motif protein) (Protein cypher) (Protein oracle) Length = 723 Score = 31.6 bits (70), Expect = 0.87 Identities = 19/59 (32%), Positives = 25/59 (42%) Frame = -2 Query: 433 PYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKP 257 P P YTP+ AP Y PS +S S + + SP + SA P+ R P Sbjct: 427 PSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPSAAYSGGPSESASRPP 485
>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 31.6 bits (70), Expect = 0.87 Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 6/96 (6%) Frame = -2 Query: 409 PATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAP------TAPILRKPSTV 248 P T P A + S + E +PLW + SS TT QAP T P + ST Sbjct: 76 PRTGPPRATVHRPLAATSPAQSPETTPLWATAGPSS-TTFQAPLGPSPTTPPAAERTSTT 134 Query: 247 RLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 + P ST PA + V + P T Sbjct: 135 SQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTPRT 170
>Y1614_METJA (Q59009) Hypothetical protein MJ1614| Length = 251 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Frame = +3 Query: 168 RMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAED--AFD---CLHRG 332 R P + ++ + +D+G+ LN+ ++ FLKI A + ++ FD C+ +G Sbjct: 150 RNPDKEIIENLGELKITLDIGHSFLNKNIENFLKISDKIAHIHIHDNNGEFDEHLCIGKG 209 Query: 333 DISKRQLEETLKKM 374 I+ ++ LKK+ Sbjct: 210 KINFNNFKKDLKKI 223
>DXR_CHLTE (Q8KG43) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 382 Score = 30.4 bits (67), Expect = 1.9 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 13/84 (15%) Frame = -1 Query: 413 HPSNSTPICTLLAHFLQRLFK---------LALRDIPSVEAVEGVLGDHP----AGADGA 273 HP + H ++ L K +++RD S E ++G+LGDH G +GA Sbjct: 24 HPERFSIAALAEGHDVEMLLKQIDEFRPSLVSVRDEASRERLKGMLGDHKPEILCGLEGA 83 Query: 272 DLEEAVDGAVEQRVAEVDGHVHLV 201 AVDGA + V+ + G LV Sbjct: 84 AEVAAVDGA-DMVVSAIVGAAGLV 106
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 30.4 bits (67), Expect = 1.9 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 14/108 (12%) Frame = -2 Query: 421 PTYTPATAPQYAPSLHI--------------FFSVSSSWRFEISPLWRQSKASSATTLQA 284 P+ P +P P+LH+ F V++ + P Q KA Q Sbjct: 861 PSQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVTTPF-----PALPQPKALLERFHQV 915 Query: 283 PTAPILRKPSTVRLSSGLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 P+ IL+ + G P + TST P SPA +L S + GT Sbjct: 916 PSGIILQNKA-----GGAPAAPQTSTSLGPLTSPAASVLVSGQAPSGT 958
>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)| Length = 203 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -2 Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 G PR T FDPA VG++ PGT Sbjct: 145 GYPRHAETGVAFDPARHEVVGVVQDPDAPPGT 176
>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)| Length = 768 Score = 29.3 bits (64), Expect = 4.3 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 11/45 (24%) Frame = -2 Query: 328 LWRQSKASSATTLQAPTAP-----------ILRKPSTVRLSSGLP 227 L RQS AS + +P P ++ KPSTV+LSSG+P Sbjct: 366 LRRQSNASDDSLSLSPGTPPSLLNNSTHRQMMSKPSTVKLSSGIP 410
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 29.3 bits (64), Expect = 4.3 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = -2 Query: 418 TYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATT--LQAPTAPILRKPSTVR 245 TY+ AT+P+Y+P++ I +S SS+ SP + + + + T + +PTAP P++ Sbjct: 1817 TYS-ATSPRYSPNMSI-YSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPA 1874 Query: 244 LSSGLP 227 S P Sbjct: 1875 YSPSSP 1880
>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type| coiled-coil domain protein 1) Length = 970 Score = 29.3 bits (64), Expect = 4.3 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = -2 Query: 433 PYSMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPS 254 P S+PT PA+ P+ AP + S ++ L + +AS++ LQ P AP RKP+ Sbjct: 567 PPSLPTPRPASQPRKAPVI--------SSTPKLPALAAREEASTSRLLQPPEAP--RKPA 616
>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1| Length = 468 Score = 29.3 bits (64), Expect = 4.3 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Frame = -2 Query: 409 PATAPQYAPSLHIFF-----SVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVR 245 PA+APQ+ PS+ SSS R + L + +Q P+L P V Sbjct: 173 PASAPQFYPSVQSLMPDQYGGPSSSLRVARTLL-------PGSYMQGAYGPMLLTPGVVP 225 Query: 244 LSSGLPRSMATSTLFDPAASPAVG 173 + P S S P A AVG Sbjct: 226 IPGWSPYSAPVSPALSPGAQHAVG 249
>HRJ97_HUMAN (Q86Y56) Heat repeats-containing protein FLJ20397| Length = 855 Score = 28.9 bits (63), Expect = 5.7 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -1 Query: 422 AYIHPSNSTPICTLLAHFLQRLFKLALRDIPSV-EAVEGVLG 300 A IH N + +L+HF QRLF D+P V AV V+G Sbjct: 233 AVIHFGNGKSVDDVLSHFAQRLFD----DVPQVRRAVASVVG 270
>ARM_ANOGA (Q7QHW5) Armadillo segment polarity protein| Length = 830 Score = 28.9 bits (63), Expect = 5.7 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%) Frame = -1 Query: 410 PSNSTPICTLLA-HFLQRLFKLALRDIPSVEAVEGVLGDHPAGA--DGADLEEAVDGAV 243 P+N+ P+ A H L RL A +D + G P GA DG +EE V+G V Sbjct: 506 PANAAPLREHGAIHLLVRLLFKAFQDTQRQRSSVASNGSQPPGAYADGVRMEEIVEGTV 564
>FZD5_HUMAN (Q13467) Frizzled 5 precursor (Frizzled-5) (Fz-5) (hFz5) (FzE5)| Length = 585 Score = 28.9 bits (63), Expect = 5.7 Identities = 28/92 (30%), Positives = 36/92 (39%) Frame = -2 Query: 415 YTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVRLSS 236 YTP P Y L SV + SPL RQ + + P+L + + V L Sbjct: 90 YTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEV-LCM 148 Query: 235 GLPRSMATSTLFDPAASPAVGILPSSRLAPGT 140 RS AT+ P PA LP AP + Sbjct: 149 DYNRSEATTA--PPRPFPAKPTLPGPPGAPAS 178
>ILVD_METKA (Q8TW40) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 549 Score = 28.9 bits (63), Expect = 5.7 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Frame = +3 Query: 171 MPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDCL---HRGDIS 341 +P A +AA + AI G P+ VDG RV DAF+ + G+IS Sbjct: 123 VPGALMAAARLDLPAAIVTGGPMEPGCVDGE---------RVDLIDAFEAVGAYEEGEIS 173 Query: 342 KRQLEETLKKMCKEGAYWGAVAGVY 416 + +LEE ++ C G+ AG++ Sbjct: 174 EEELEELEQRACPGP---GSCAGMF 195
>CNKR1_HUMAN (Q969H4) Connector enhancer of kinase suppressor of ras 1| (Connector enhancer of KSR1) (hCNK1) (Connector enhancer of KSR-like) (CNK homolog protein 1) Length = 720 Score = 28.9 bits (63), Expect = 5.7 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = -2 Query: 421 PTYTPATAPQYAPSLHIF-FSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTVR 245 P+ + A APS +F F +SS+ SP W S + L P P P+ V Sbjct: 306 PSLSLAPLSPRAPSEDVFAFDLSSNPSPGPSPAWTDSASLGPEPLPIPPEPPAILPAGVA 365 Query: 244 LSSGLPRS 221 + GLP S Sbjct: 366 GTPGLPES 373
>SYT_SALCH (Q57PV3) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 642 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%) Frame = +3 Query: 171 MPTAGLAAGSNK--------VDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDA 311 MP L GS + +DVA+D+G L T+ G + V AC ++ DA Sbjct: 1 MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGELVDACDLIENDA 55
>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable| G-protein coupled receptor 158-like 1) Length = 2367 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -2 Query: 283 PTAPILRKPST--VRLSSGL--PRSMATSTLFDPAASPAVGILPSSRLAP 146 P PI + ST + LS GL PR ++ ++ PA PA+ P+ LAP Sbjct: 929 PHPPIRHQVSTPILALSGGLGEPRMLSPTSTLAPALLPALAPTPAPALAP 978
>ILVD_FRATT (Q5NH32) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 551 Score = 28.5 bits (62), Expect = 7.4 Identities = 26/92 (28%), Positives = 38/92 (41%) Frame = +3 Query: 141 VPGARREEGRMPTAGLAAGSNKVDVAIDLGNPLLNRTVDGFLKIGAVGACRVVAEDAFDC 320 +PG GR+ G + + G P+ V F GA C Sbjct: 129 MPGCMMALGRLNRPGFVIYGGTIQAGVMRGKPI--DIVTAFQSYGA-------------C 173 Query: 321 LHRGDISKRQLEETLKKMCKEGAYWGAVAGVY 416 L G I++++ +ET+KK C GA GA G+Y Sbjct: 174 LS-GQITEQERQETIKKAC-PGA--GACGGMY 201
>BCCA_MYCLE (P46392) Acetyl-/propionyl-coenzyme A carboxylase alpha chain| [Includes: Biotin carboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)] Length = 598 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = +3 Query: 333 DISKRQLEETLKKMCKEGAYWGA 401 D ++++ E+ K++CKE Y+GA Sbjct: 256 DAQRKEIHESAKRICKEAHYYGA 278
>ARLY_THET2 (Q72GZ4) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 462 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/50 (30%), Positives = 25/50 (50%) Frame = -1 Query: 431 ILHAYIHPSNSTPICTLLAHFLQRLFKLALRDIPSVEAVEGVLGDHPAGA 282 +L Y H + P+ LLAH+ +++ RD +E + L + P GA Sbjct: 153 VLPGYTHLQRAQPV--LLAHWFLAYYEMLKRDAGRLEDAKERLNESPLGA 200
>TAF1C_MOUSE (Q6PDZ2) TATA box-binding protein-associated factor, RNA polymerase| I, subunit C (TATA box-binding protein-associated factor 1C) (TBP-associated factor 1C) (TBP-associated factor RNA polymerase I 95 kDa) (TAFI95) Length = 836 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/83 (26%), Positives = 36/83 (43%) Frame = -2 Query: 427 SMPTYTPATAPQYAPSLHIFFSVSSSWRFEISPLWRQSKASSATTLQAPTAPILRKPSTV 248 ++P P APQ + + ++ +W ++ WR+ + ++ T P R Sbjct: 666 TLPRAEPPPAPQCSQQDELTERLTEAWEGRVTAWWRRHRGETSETQTQSKRPKRR----T 721 Query: 247 RLSSGLPRSMATSTLFDPAASPA 179 +LSS S TS L P AS A Sbjct: 722 QLSSTF--SSFTSYLDSPDASSA 742
>YBL7_SCHPO (Q9URV4) Hypothetical protein C106.07c in chromosome II| Length = 167 Score = 28.1 bits (61), Expect = 9.7 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = -2 Query: 337 ISPLWRQSKASSATTLQAPTAPILRKPSTVRLSSGLPRSMATSTLFDPAASP 182 +S LWR K+ +APT P+ P + RS+++S+ P++SP Sbjct: 1 MSNLWRNLKSVRLPFRRAPTLPLYNVP--------VRRSISSSSSIPPSSSP 44 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,256,934 Number of Sequences: 219361 Number of extensions: 784548 Number of successful extensions: 3555 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3544 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
