ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak0c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RPB6_RAT (O88828) DNA-directed RNA polymerases I, II, and III 14... 134 2e-31
2RPB6_MOUSE (P61219) DNA-directed RNA polymerases I, II, and III ... 134 2e-31
3RPB6_PONPY (Q5R592) DNA-directed RNA polymerases I, II, and III ... 134 2e-31
4RPB6_HUMAN (P61218) DNA-directed RNA polymerases I, II, and III ... 134 2e-31
5RPB6_CRIGR (P61217) DNA-directed RNA polymerases I, II, and III ... 134 2e-31
6RPB6_YEAST (P20435) DNA-directed RNA polymerases I, II, and III ... 127 2e-29
7RPB6_DROME (Q24320) DNA-directed RNA polymerases I, II, and III ... 127 2e-29
8RPB6_SCHPO (P36595) DNA-directed RNA polymerases I, II, and III ... 127 3e-29
9RPB6_CAEEL (Q17684) Probable DNA-directed RNA polymerases I, II,... 121 2e-27
10RPOK_METMA (Q8PW42) DNA-directed RNA polymerase subunit K (EC 2.... 65 1e-10
11RPOK_METAC (Q8TT40) DNA-directed RNA polymerase subunit K (EC 2.... 64 3e-10
12RPOK_AERPE (Q9YDJ9) DNA-directed RNA polymerase subunit K (EC 2.... 62 1e-09
13RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.... 61 3e-09
14RPOK_ARCFU (O29134) DNA-directed RNA polymerase subunit K (EC 2.... 60 5e-09
15RPOK_METTH (O26148) DNA-directed RNA polymerase subunit K (EC 2.... 60 6e-09
16RPOK_PYRAE (Q8ZTF9) DNA-directed RNA polymerase subunit K (EC 2.... 59 1e-08
17RPOK_PICTO (Q6L1M4) DNA-directed RNA polymerase subunit K (EC 2.... 57 4e-08
18RPOK_HALSA (Q9HQJ0) DNA-directed RNA polymerase subunit K (EC 2.... 56 7e-08
19RPOK_SULSO (Q97ZJ9) DNA-directed RNA polymerase subunit K (EC 2.... 55 1e-07
20RPOK_THEAC (Q9HJ14) DNA-directed RNA polymerase subunit K (EC 2.... 54 3e-07
21RPOK_THEVO (P58232) DNA-directed RNA polymerase subunit K (EC 2.... 53 6e-07
22RPOK_PYRFU (Q8U0E8) DNA-directed RNA polymerase subunit K (EC 2.... 52 1e-06
23RPOK_PYRHO (P62015) DNA-directed RNA polymerase subunit K (EC 2.... 52 2e-06
24RPOK_PYRAB (P62014) DNA-directed RNA polymerase subunit K (EC 2.... 52 2e-06
25RPOK_SULAC (P39463) DNA-directed RNA polymerase subunit K (EC 2.... 51 3e-06
26RPOK_PYRKO (Q5JJD0) DNA-directed RNA polymerase subunit K (EC 2.... 50 4e-06
27RPOK_HALMA (P29200) DNA-directed RNA polymerase subunit K (EC 2.... 50 5e-06
28RPOK_SULTO (Q972B1) DNA-directed RNA polymerase subunit K (EC 2.... 49 1e-05
29RPOK_METJA (Q57650) DNA-directed RNA polymerase subunit K (EC 2.... 40 0.005
30RPOZ_BRUME (Q8YG64) DNA-directed RNA polymerase omega chain (EC ... 31 3.2

>RPB6_RAT (O88828) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score =  134 bits (338), Expect = 2e-31
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP  IRRYL
Sbjct: 51  RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110

Query: 415 PDGSYEDWGVDELIVED 465
           PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIISD 127



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>RPB6_MOUSE (P61219) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score =  134 bits (338), Expect = 2e-31
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP  IRRYL
Sbjct: 51  RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110

Query: 415 PDGSYEDWGVDELIVED 465
           PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIISD 127



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>RPB6_PONPY (Q5R592) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score =  134 bits (337), Expect = 2e-31
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP  IRRYL
Sbjct: 51  RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110

Query: 415 PDGSYEDWGVDELIVED 465
           PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127



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>RPB6_HUMAN (P61218) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
           (RPABC2)
          Length = 127

 Score =  134 bits (337), Expect = 2e-31
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP  IRRYL
Sbjct: 51  RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110

Query: 415 PDGSYEDWGVDELIVED 465
           PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127



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>RPB6_CRIGR (P61217) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6) (RPABC14.4) (RPB14.4)
          Length = 127

 Score =  134 bits (337), Expect = 2e-31
 Identities = 66/77 (85%), Positives = 70/77 (90%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ARKIP  IRRYL
Sbjct: 51  RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYL 110

Query: 415 PDGSYEDWGVDELIVED 465
           PDGSYEDWGVDELI+ D
Sbjct: 111 PDGSYEDWGVDELIITD 127



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>RPB6_YEAST (P20435) DNA-directed RNA polymerases I, II, and III 23 kDa|
           polypeptide (EC 2.7.7.6) (ABC23)
          Length = 155

 Score =  127 bits (320), Expect = 2e-29
 Identities = 62/76 (81%), Positives = 67/76 (88%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERARILGTRALQISMNAPV V+LEGETDPL IAMKEL  +KIP  IRRYL
Sbjct: 79  RATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYL 138

Query: 415 PDGSYEDWGVDELIVE 462
           PDGS+EDW V+ELIV+
Sbjct: 139 PDGSFEDWSVEELIVD 154



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>RPB6_DROME (Q24320) DNA-directed RNA polymerases I, II, and III 14.4 kDa|
           polypeptide (EC 2.7.7.6) (RPB6)
          Length = 131

 Score =  127 bits (319), Expect = 2e-29
 Identities = 60/78 (76%), Positives = 70/78 (89%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TTKYMTKYERAR+LGTRALQI+M AP+MVEL+GETDPL+IAMKEL+ +KIP  IRRYL
Sbjct: 54  RITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYL 113

Query: 415 PDGSYEDWGVDELIVEDS 468
           PD SYEDW +DELI+ D+
Sbjct: 114 PDHSYEDWSIDELIMVDN 131



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>RPB6_SCHPO (P36595) DNA-directed RNA polymerases I, II, and III 15 kDa|
           polypeptide (EC 2.7.7.6) (RPABC6)
          Length = 142

 Score =  127 bits (318), Expect = 3e-29
 Identities = 61/74 (82%), Positives = 66/74 (89%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R TT YMTKYERARILGTRALQISMNAPV+V+LEGETDPL+IAMKEL  +KIP  +RRYL
Sbjct: 69  RTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYL 128

Query: 415 PDGSYEDWGVDELI 456
           PDGSYEDW V ELI
Sbjct: 129 PDGSYEDWSVAELI 142



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>RPB6_CAEEL (Q17684) Probable DNA-directed RNA polymerases I, II, and III 14.4|
           kDa polypeptide (EC 2.7.7.6) (RPB6)
          Length = 137

 Score =  121 bits (303), Expect = 2e-27
 Identities = 57/75 (76%), Positives = 65/75 (86%)
 Frame = +1

Query: 241 TTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPD 420
           TT +MTKYERAR+LGTRALQI+M APVMVELEGETDPLEIA KEL+ R+IP  +RRYLPD
Sbjct: 62  TTPFMTKYERARVLGTRALQIAMGAPVMVELEGETDPLEIARKELKQRRIPIIVRRYLPD 121

Query: 421 GSYEDWGVDELIVED 465
           GSYEDW  D+L + D
Sbjct: 122 GSYEDWPTDQLQLAD 136



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>RPOK_METMA (Q8PW42) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 83

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 30/51 (58%), Positives = 42/51 (82%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++ERARI+G RALQI+M APV+VE +G  DPL +A++EL+A  IP T++R
Sbjct: 30  TRFERARIVGARALQIAMGAPVLVEDDGRLDPLGVAIEELKAGVIPITVKR 80



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>RPOK_METAC (Q8TT40) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 60

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++ERARI+G RALQI+M APV+V+ +G  DPL +A+ EL+A  IP T++R
Sbjct: 7   TRFERARIVGARALQIAMGAPVLVDDDGRLDPLGVAIAELKAEIIPITVKR 57



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>RPOK_AERPE (Q9YDJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 89

 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
 Frame = +1

Query: 250 YMTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423
           Y+TKYERARI+G RA Q+S+ AP +V+ E  G  +PL+IA  E+    +P +I RYLP G
Sbjct: 7   YLTKYERARIIGVRAFQLSIGAPPLVDPERAGSRNPLDIARYEVDNGILPVSIYRYLPGG 66

Query: 424 SYEDWGVDELI 456
             +   +  L+
Sbjct: 67  GGQSLSLSRLV 77



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>RPO6_MIMIV (Q5UQ32) DNA-directed RNA polymerase subunit 6 (EC 2.7.7.6)|
          Length = 396

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 31/73 (42%), Positives = 42/73 (57%)
 Frame = +1

Query: 235 RNTTKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYL 414
           R T   +T YE  RILGTRA Q +  A  +++      P ++A  EL A+   F +RR+L
Sbjct: 187 RETDPILTYYEIVRILGTRAQQFNYGAKPLIKGVEGMHPAKMAFVELTAKMTSFIVRRHL 246

Query: 415 PDGSYEDWGVDEL 453
           P   YEDW +DEL
Sbjct: 247 PGKKYEDWRIDEL 259



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>RPOK_ARCFU (O29134) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 75

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 28/51 (54%), Positives = 41/51 (80%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++E+ARI+G RALQI+M APV++E + +T+PLEIA++E     IP T+RR
Sbjct: 12  TRFEKARIIGARALQIAMGAPVLIETD-KTEPLEIALEEFNRGVIPITVRR 61



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>RPOK_METTH (O26148) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 61

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 27/55 (49%), Positives = 41/55 (74%)
 Frame = +1

Query: 244 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           +K +T++ERAR++G RALQISM A  +VE++   DP++IA KEL  + +P  +RR
Sbjct: 5   SKKLTRFERARLIGARALQISMGARPLVEIKESLDPVDIARKELEKKVMPLDVRR 59



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>RPOK_PYRAE (Q8ZTF9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 106

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = +1

Query: 253 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423
           +TKYE ARI+G RALQ++M A  +V+++  G  DP+ IAM+ELR   + F I R +PDG
Sbjct: 31  LTKYETARIIGARALQLAMGAQPLVDIQEVGSVDPVLIAMEELRRGLLDFIIVREMPDG 89



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>RPOK_PICTO (Q6L1M4) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 60

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
 Frame = +1

Query: 253 MTKYERARILGTRALQISMNAPVMVELEGE-TDPLEIAMKELRARKIPFTIRR 408
           +TK+E+ARI+G RALQI+M APV++++  +  DP++IAM E     IP TI+R
Sbjct: 6   LTKFEKARIIGARALQIAMGAPVIIDISPDIIDPIDIAMIEFENNVIPITIKR 58



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>RPOK_HALSA (Q9HQJ0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 60

 Score = 56.2 bits (134), Expect = 7e-08
 Identities = 25/55 (45%), Positives = 43/55 (78%)
 Frame = +1

Query: 244 TKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           +++ ++YE+ARI+G RALQ++  APV+V+ + +T+P+ IA +E  A  +PFT+RR
Sbjct: 4   SQHFSRYEKARIIGARALQVAYGAPVLVDTD-QTEPILIAAEEYDADALPFTVRR 57



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>RPOK_SULSO (Q97ZJ9) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 95

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 253 MTKYERARILGTRALQISMNAPVMVELE--GETDPLEIAMKELRARKIPFTIRRYLPDG 423
           +T+YE AR++  RALQ++M AP ++++     TD + IA +E R   +P TIRR LP+G
Sbjct: 27  LTRYEIARVISARALQLAMGAPALIDINNLSSTDVISIAEEEFRRGVLPITIRRRLPNG 85



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>RPOK_THEAC (Q9HJ14) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 61

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 26/52 (50%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRARKIPFTIRR 408
           TK+E+ARI+G RALQI+M APV++++ +   DP++IAM E     IP TI++
Sbjct: 4   TKFEKARIIGARALQIAMGAPVIIDVPKNIIDPVDIAMLEFENNVIPITIKK 55



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>RPOK_THEVO (P58232) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 61

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 26/52 (50%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVEL-EGETDPLEIAMKELRARKIPFTIRR 408
           TK+E+ARI+G RALQI+M APV++++ +   DP++IA  E     IP TI+R
Sbjct: 4   TKFEKARIIGARALQIAMGAPVIIDIPKNVIDPVDIATIEFENNVIPITIKR 55



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>RPOK_PYRFU (Q8U0E8) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++E+ARI+G RALQISM APV++++     PLE A+ E     IP T+ R
Sbjct: 5   TRFEKARIIGARALQISMGAPVLIDVPPGITPLEAAILEFEKGVIPITVIR 55



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>RPOK_PYRHO (P62015) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++E+ARI+G RALQI+M APV++++     PLE A+ E     IP T+ R
Sbjct: 5   TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55



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>RPOK_PYRAB (P62014) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/51 (47%), Positives = 35/51 (68%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++E+ARI+G RALQI+M APV++++     PLE A+ E     IP T+ R
Sbjct: 5   TRFEKARIIGARALQIAMGAPVLIDVPEGITPLEAAIMEFEKGVIPITVIR 55



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>RPOK_SULAC (P39463) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 89

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = +1

Query: 238 NTTKYMTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRARKIPFTIRRY 411
           N    +TKYE ARI+  RALQ+SM A  +++       D + IA +EL+   +P TIRR 
Sbjct: 13  NWKNKLTKYEIARIISARALQLSMGALPLIDTSNLKSDDVISIAEEELKRGVLPITIRRI 72

Query: 412 LPDGSYE 432
            P+G  E
Sbjct: 73  YPNGQVE 79



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>RPOK_PYRKO (Q5JJD0) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 23/51 (45%), Positives = 35/51 (68%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           T++E+ARI+G RALQI+M APV++++     PL+ A+ E     IP T+ R
Sbjct: 5   TRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIR 55



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>RPOK_HALMA (P29200) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 25/51 (49%), Positives = 36/51 (70%)
 Frame = +1

Query: 256 TKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRR 408
           ++YE+AR LG RALQ++  APV++E E  T P+ IA +E  A  +PFT+ R
Sbjct: 6   SRYEKARKLGARALQLAHGAPVLIETE-HTQPILIAAEEYDAGVLPFTVNR 55



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>RPOK_SULTO (Q972B1) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 86

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
 Frame = +1

Query: 253 MTKYERARILGTRALQISMNAPVMVELEG--ETDPLEIAMKELRARKIPFTIRRYLPDGS 426
           +TKYE ARI+  RALQ++M A  +++       D + IA +EL+   +P T+RR  P+G 
Sbjct: 15  LTKYEIARIISARALQLAMGASPLIDTNNLPFNDVISIAEEELKRGVLPITVRRVYPNGK 74

Query: 427 YE 432
            E
Sbjct: 75  IE 76



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>RPOK_METJA (Q57650) DNA-directed RNA polymerase subunit K (EC 2.7.7.6)|
          Length = 57

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +1

Query: 253 MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIP 393
           +TK+E ARILG R+LQIS  A   +E + ++  L+IA +E++  K+P
Sbjct: 3   LTKFEIARILGARSLQISSGAYATIETKCDSS-LKIAYEEIKQGKVP 48



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>RPOZ_BRUME (Q8YG64) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP|
           omega subunit) (Transcriptase omega chain) (RNA
           polymerase omega subunit)
          Length = 133

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = +1

Query: 247 KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKEL 375
           K   ++E   + G RA QIS  AP+ V+ + + +P+ +A++E+
Sbjct: 12  KVENRFELVLLAGHRARQISQGAPITVDRDNDKNPV-VALREI 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,242,685
Number of Sequences: 219361
Number of extensions: 1188668
Number of successful extensions: 3426
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3414
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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