ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak0c02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067P18, full insert sequence Length = 990 Score = 444 bits (224), Expect = e-121 Identities = 371/420 (88%) Strand = Plus / Plus Query: 54 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatga 113 |||||||| |||||||||||||||||| ||||| || | |||||||||||||||||||| Sbjct: 90 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggtatgaggatga 149 Query: 114 gcctccagaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgc 173 ||| |||||| |||| ||||||||||||| |||||| || |||||||| || ||||||| Sbjct: 150 gccaccagaacctgagattgaggaaggggctgaagaggaacctgagaataacgaggatgg 209 Query: 174 ccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtcc 233 ||||||||| || ||||||| || | |||||| |||||||| ||||| ||| || || Sbjct: 210 ccctgatgaggttgtaggggcagaggctgaagataaggaacaagaaaaaactcagcgccc 269 Query: 234 acgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgc 293 |||||| || |||| |||||||| || |||||||| || |||||||| || |||||||| Sbjct: 270 acgcaaaacgtcaaagtatatgacaaagtatgagcgtgcccgcatcctgggtacacgtgc 329 Query: 294 tttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctct 353 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 330 attacagataagcatgaatgctccagttatggttgagcttgagggagaaactgatcctct 389 Query: 354 tgagattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtactt 413 |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 390 tgagattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtactt 449 Query: 414 acctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 473 |||||| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 450 acctgacggaagctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 509
>gb|AY104237.1| Zea mays PCO104743 mRNA sequence Length = 1061 Score = 414 bits (209), Expect = e-112 Identities = 362/413 (87%) Strand = Plus / Plus Query: 61 ggagccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctcca 120 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 99 ggagccatggcggacgacgattacaacgaaattgacatggggtatgaggatgagccccca 158 Query: 121 gaagctgatattgaggaaggggttgaagaagatcctgagaacaatgaggatgcccctgat 180 ||| | || ||||||||||| | ||||||||| ||||||||||| || |||||||||||| Sbjct: 159 gaaccggagattgaggaaggagctgaagaagagcctgagaacaacgaagatgcccctgat 218 Query: 181 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 240 || || |||| ||||| |||||||| ||||||||||||||||| ||| |||||| Sbjct: 219 gacgtcataggtggtgagggtgaagataaggaacaggaaaagaccaagcgtgaacgcaaa 278 Query: 241 acaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcag 300 ||||||||||| ||||| || || || || || ||||| ||||| ||||| || |||||| Sbjct: 279 acaacaaaatacatgacgaagtacgaacgtgcgcgcattcttggtacacgagccttgcag 338 Query: 301 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 360 |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct: 339 ataagcatgaatgctccagtcatggttgagcttgagggagaaactgaccctcttgagatt 398 Query: 361 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 420 || ||||| || || ||||| |||||||| ||||||||||| || |||||| |||||||| Sbjct: 399 gcgatgaaggagcttagagcgcgcaagatacccttcacgatcagacggtacctacctgat 458 Query: 421 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 473 ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 459 ggaagttatgaagactggggagtagacgagctcattgtggaggactcctggaa 511
>dbj|AK121807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097N04, full insert sequence Length = 758 Score = 379 bits (191), Expect = e-102 Identities = 372/431 (86%), Gaps = 6/431 (1%) Strand = Plus / Plus Query: 64 gccatggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaa 123 ||||||||||| ||||| ||||| || | ||||||||||| ||||||||||| |||||| Sbjct: 113 gccatggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaa 172 Query: 124 gctgatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgat 180 |||| ||||||||||| | ||| ||||| |||||||| |||||||||||| ||| Sbjct: 173 cctgagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggat 232 Query: 181 gatgtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaat 240 |||||||| |||| ||||| ||| ||||| ||||||||||| || |||||||| || Sbjct: 233 gatgtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaa 289 Query: 241 acaacaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcag 300 ||| |||| |||||||| ||||| ||||| |||||||| ||||| |||||||| |||||| Sbjct: 290 acatcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcag 349 Query: 301 ataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagatt 360 ||||||||||||||||| |||||||| |||||||| || || |||||||| ||||||||| Sbjct: 350 ataagcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagatt 409 Query: 361 gccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgat 420 |||||||||||| ||||||||||||||||||| ||||| || |||||||| ||||||||| Sbjct: 410 gccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgat 469 Query: 421 ggaagctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaa 480 ||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| Sbjct: 470 ggaagctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaa 529 Query: 481 gttggcggggg 491 ||||| ||||| Sbjct: 530 gttggtggggg 540
>ref|XM_477993.1| Oryza sativa (japonica cultivar-group), mRNA Length = 429 Score = 373 bits (188), Expect = e-100 Identities = 369/428 (86%), Gaps = 6/428 (1%) Strand = Plus / Plus Query: 67 atggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaagct 126 |||||||| ||||| ||||| || | ||||||||||| ||||||||||| |||||| || Sbjct: 1 atggcggaggacgactacaacgacatggacatggggtacgaggatgagcccccagaacct 60 Query: 127 gatattgaggaaggggttgaagaagatcctgagaa---caatgaggatgcccctgatgat 183 || ||||||||||| | ||| ||||| |||||||| |||||||||||| |||||| Sbjct: 61 gagattgaggaaggagctgaggaagagcctgagaataacaatgaggatgctgtggatgat 120 Query: 184 gtggtagggggtgaaggtgaagaaaaggaacaggaaaagactgcccgtccacgcaataca 243 ||||| |||| ||||| ||| ||||| ||||||||||| || |||||||| || ||| Sbjct: 121 gtggttggggctgaagatgac---aaggagcaggaaaagacggctcgtccacggaaaaca 177 Query: 244 acaaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagata 303 |||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||| Sbjct: 178 tcaaagtatatgacaaaatacgagcgtgcacgcattcttggtacacgtgccttgcagata 237 Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgcc 363 |||||||||||||| |||||||| |||||||| || || |||||||| |||||||||||| Sbjct: 238 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgagattgcc 297 Query: 364 atgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacctgatgga 423 ||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||||| Sbjct: 298 atgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttacctgatgga 357 Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagtt 483 |||||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 358 agctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaagtt 417 Query: 484 ggcggggg 491 || ||||| Sbjct: 418 ggtggggg 425
>ref|NM_124573.1| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase AT5G51940 mRNA, complete cds Length = 662 Score = 139 bits (70), Expect = 1e-29 Identities = 213/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 229 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 288 ||||||||||| || |||| | ||||||||| |||||||| || || ||||| ||||| Sbjct: 261 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 320 Query: 289 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 348 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 321 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 380 Query: 349 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 407 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 381 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 439 Query: 408 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 467 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 440 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 499 Query: 468 gtggaagcgtcaagttgg 485 ||||| ||||||||||| Sbjct: 500 atggaaacgtcaagttgg 517
>gb|AY063088.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II subunit (At5g51940) mRNA, complete cds Length = 466 Score = 139 bits (70), Expect = 1e-29 Identities = 213/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 229 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 288 ||||||||||| || |||| | ||||||||| |||||||| || || ||||| ||||| Sbjct: 169 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 228 Query: 289 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 348 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 229 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 288 Query: 349 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 407 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 289 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 347 Query: 408 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 467 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 348 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 407 Query: 468 gtggaagcgtcaagttgg 485 ||||| ||||||||||| Sbjct: 408 atggaaacgtcaagttgg 425
>gb|AF370301.1| Arabidopsis thaliana putative DNA-directed RNA polymerase II subunit (At5g51940) mRNA, complete cds Length = 650 Score = 139 bits (70), Expect = 1e-29 Identities = 213/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 229 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 288 ||||||||||| || |||| | ||||||||| |||||||| || || ||||| ||||| Sbjct: 256 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 315 Query: 289 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 348 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 316 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 375 Query: 349 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 407 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 376 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 434 Query: 408 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 467 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 435 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 494 Query: 468 gtggaagcgtcaagttgg 485 ||||| ||||||||||| Sbjct: 495 atggaaacgtcaagttgg 512
>gb|AY088602.1| Arabidopsis thaliana clone 8268 mRNA, complete sequence Length = 663 Score = 139 bits (70), Expect = 1e-29 Identities = 213/258 (82%), Gaps = 2/258 (0%) Strand = Plus / Plus Query: 229 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 288 ||||||||||| || |||| | ||||||||| |||||||| || || ||||| ||||| Sbjct: 262 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 321 Query: 289 cgtgctttgcagataagcatgaatgctccagttatggttgagcttgagggtgaaactgat 348 || ||||||||||| |||||||||||||| || ||||||||||| |||||||| |||||| Sbjct: 322 cgcgctttgcagattagcatgaatgctcctgtcatggttgagctagagggtgagactgat 381 Query: 349 cctcttgagattgccatgaaagaactgagagca-cgcaagatccccttcacgattaggcg 407 || ||||||||||| ||||| || || || ||| || ||||| || ||||| ||||| || Sbjct: 382 ccacttgagattgcgatgaaggagcttag-gcagcggaagataccattcactattagacg 440 Query: 408 gtacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactc 467 || |||||||||| || | ||||| |||||||| || || || || ||||| ||||| Sbjct: 441 ctatctacctgatgggagtttcgaggaatggggagttgatgaactgatcgtggaagactc 500 Query: 468 gtggaagcgtcaagttgg 485 ||||| ||||||||||| Sbjct: 501 atggaaacgtcaagttgg 518
>ref|NM_126492.2| Arabidopsis thaliana DNA binding / DNA-directed RNA polymerase AT2G04630 mRNA, complete cds Length = 732 Score = 127 bits (64), Expect = 5e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 252 tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 257 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 316 Query: 312 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 371 |||||| |||||||||||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct: 317 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 376 Score = 46.1 bits (23), Expect = 0.13 Identities = 46/53 (86%), Gaps = 3/53 (5%) Strand = Plus / Plus Query: 67 atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 116 ||||| |||||||||||||||||||| |||| |||| ||||| |||||||| Sbjct: 66 atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 118
>gb|BT010184.1| Arabidopsis thaliana At2g04630 gene, complete cds Length = 435 Score = 127 bits (64), Expect = 5e-26 Identities = 106/120 (88%) Strand = Plus / Plus Query: 252 tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct: 192 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagattagcatgaa 251 Query: 312 tgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaaga 371 |||||| |||||||||||| | |||||||| |||||||| ||||||||||| |||||||| Sbjct: 252 tgctcctgttatggttgagttggagggtgagactgatccacttgagattgcgatgaaaga 311 Score = 46.1 bits (23), Expect = 0.13 Identities = 46/53 (86%), Gaps = 3/53 (5%) Strand = Plus / Plus Query: 67 atggcggacgacgattacaatgaagt---tgacatggggtatgaggatgagcc 116 ||||| |||||||||||||||||||| |||| |||| ||||| |||||||| Sbjct: 1 atggctgacgacgattacaatgaagtcgatgacttgggatatgaagatgagcc 53
>ref|NM_188966.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 109 bits (55), Expect = 1e-20 Identities = 82/91 (90%) Strand = Plus / Plus Query: 245 caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 304 |||| |||||||| ||||| ||||| |||||||||||| | |||||||| |||||||||| Sbjct: 263 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 322 Query: 305 gcatgaatgctccagttatggttgagcttga 335 ||||||||||||| |||||||| |||||||| Sbjct: 323 gcatgaatgctcctgttatggtcgagcttga 353 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 67 atggcggacgacgattacaatgaagttgacatggggtatgaggatgagcctccagaagct 126 |||||||| ||||| ||||| || | || |||||||| ||||||||||| |||||| || Sbjct: 1 atggcggaggacgactacaacgacatggatatggggtacgaggatgagcccccagaacct 60 Query: 127 gatattgagg 136 || ||||||| Sbjct: 61 gagattgagg 70
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 356 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 415 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 138783 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 138724 Query: 416 ctgatggaag 425 |||| ||||| Sbjct: 138723 ctgacggaag 138714 Score = 99.6 bits (50), Expect = 1e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 140195 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 140142 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 473 ||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 138634 agctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 138585 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 54 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 103 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 141920 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 141871 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Minus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||||||||||||||| |||||| |||| ||||||| Sbjct: 140568 ggtatgaggatgagccaccagaacctgagattgagg 140533
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 356 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 415 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 21445872 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 21445813 Query: 416 ctgatggaag 425 |||| ||||| Sbjct: 21445812 ctgacggaag 21445803 Score = 99.6 bits (50), Expect = 1e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 21447284 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 21447231 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 473 ||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 21445723 agctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 21445674 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 54 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 103 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 21449009 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 21448960 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Minus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||||||||||||||| |||||| |||| ||||||| Sbjct: 21447657 ggtatgaggatgagccaccagaacctgagattgagg 21447622
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 107 bits (54), Expect = 4e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 356 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 415 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 21438901 agattgccatgaaagagctgagagcacgcaagatcccattcacaattaggcggtacttac 21438842 Query: 416 ctgatggaag 425 |||| ||||| Sbjct: 21438841 ctgacggaag 21438832 Score = 99.6 bits (50), Expect = 1e-17 Identities = 53/54 (98%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 21440313 agcatgaatgctccagttatggttgagcttgagggagaaactgatcctcttgag 21440260 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaa 473 ||||||||||||||||| || |||||||| |||||||||||||| ||||| Sbjct: 21438752 agctatgaggactggggcgttgacgagcttattgtggaggactcctggaa 21438703 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 54 ggcggcgggagccatggcggacgacgattacaatgaagttgacatggggt 103 |||||||| |||||||||||||||||| ||||| || | |||||||||| Sbjct: 21442038 ggcggcggaagccatggcggacgacgactacaacgacatggacatggggt 21441989 Score = 48.1 bits (24), Expect = 0.034 Identities = 33/36 (91%) Strand = Plus / Minus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||||||||||||||| |||||| |||| ||||||| Sbjct: 21440686 ggtatgaggatgagccaccagaacctgagattgagg 21440651
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 356 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 415 ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 16236891 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 16236832 Query: 416 ctgatggaag 425 |||||||||| Sbjct: 16236831 ctgatggaag 16236822 Score = 95.6 bits (48), Expect = 2e-16 Identities = 122/146 (83%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 160 aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 219 |||||||||||||| ||||||||||| |||| ||||| ||| ||||| |||||| Sbjct: 16238499 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 16238443 Query: 220 aagactgcccgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatc 279 ||||| || |||||||| || ||| |||| |||||||| ||||| ||||| |||||||| Sbjct: 16238442 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 16238383 Query: 280 cttggcacacgtgctttgcagataag 305 ||||| |||||||| ||||||||||| Sbjct: 16238382 cttggtacacgtgccttgcagataag 16238357 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagtt 483 |||||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 16236730 agctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaagtt 16236671 Query: 484 ggcggggg 491 || ||||| Sbjct: 16236670 ggtggggg 16236663 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 |||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16238265 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 16238212 Score = 56.0 bits (28), Expect = 1e-04 Identities = 50/56 (89%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 250 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 305 |||||||| ||||| ||||| |||||||||||||| |||| ||| ||||||||||| Sbjct: 16222537 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 16222483 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16222400 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16222347 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 16221988 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 16221935 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||| ||||||||||| |||||| |||| ||||||| Sbjct: 16238645 ggtacgaggatgagcccccagaacctgagattgagg 16238610
>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1634_H04 Length = 151699 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%) Strand = Plus / Minus Query: 356 agattgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttac 415 ||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||| Sbjct: 57329 agattgccatgaaagaattgagagcacgcaagatccctttcacaatcaggcggtatttac 57270 Query: 416 ctgatggaag 425 |||||||||| Sbjct: 57269 ctgatggaag 57260 Score = 95.6 bits (48), Expect = 2e-16 Identities = 122/146 (83%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 160 aacaatgaggatgcccctgatgatgtggtagggggtgaaggtgaagaaaaggaacaggaa 219 |||||||||||||| ||||||||||| |||| ||||| ||| ||||| |||||| Sbjct: 58937 aacaatgaggatgctgtggatgatgtggttggggctgaagatgac---aaggagcaggaa 58881 Query: 220 aagactgcccgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatc 279 ||||| || |||||||| || ||| |||| |||||||| ||||| ||||| |||||||| Sbjct: 58880 aagacggctcgtccacggaaaacatcaaagtatatgacaaaatacgagcgtgcacgcatt 58821 Query: 280 cttggcacacgtgctttgcagataag 305 ||||| |||||||| ||||||||||| Sbjct: 58820 cttggtacacgtgccttgcagataag 58795 Score = 79.8 bits (40), Expect = 1e-11 Identities = 61/68 (89%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagtt 483 |||||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 57168 agctatgaggactggggagttgatgagctcattgtagaggactcctggaaacggcaagtt 57109 Query: 484 ggcggggg 491 || ||||| Sbjct: 57108 ggtggggg 57101 Score = 60.0 bits (30), Expect = 9e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 |||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 58703 agcatgaatgctcctgttatggtcgagcttgaaggggagactgatccacttgag 58650 Score = 56.0 bits (28), Expect = 1e-04 Identities = 50/56 (89%), Gaps = 1/56 (1%) Strand = Plus / Minus Query: 250 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataag 305 |||||||| ||||| ||||| |||||||||||||| |||| ||| ||||||||||| Sbjct: 42975 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagataag 42921 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 42838 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42785 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Minus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 42426 agcatgaatgctcttgttatggtcgagcttgatggggagactgatccacttgag 42373 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||| ||||||||||| |||||| |||| ||||||| Sbjct: 59083 ggtacgaggatgagcccccagaacctgagattgagg 59048
>gb|AF153278.1|AF153278 Nicotiana tabacum DNA-directed RNA polymerase IIb (NT193) mRNA, complete cds Length = 830 Score = 89.7 bits (45), Expect = 1e-14 Identities = 159/197 (80%) Strand = Plus / Plus Query: 250 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 309 |||||||| |||||||| || || | ||||| ||||| ||||| | ||||| |||||| Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322 Query: 310 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaaa 369 |||||||| || ||||||||| | ||||| ||||||||||| ||||||||||| ||||| Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccacttgagattgcaatgaag 382 Query: 370 gaactgagagcacgcaagatccccttcacgattaggcggtacttacctgatggaagctat 429 || || ||| | ||||| || ||||| ||| | || ||| | ||||||||||| ||| Sbjct: 383 gagctccgagagagaaagataccattcacaattcgccgttacctgcctgatggaagttat 442 Query: 430 gaggactggggagtcga 446 || || ||||||||||| Sbjct: 443 gaagattggggagtcga 459
>gb|AF153277.1|AF153277 Nicotiana tabacum DNA-directed RNA polymerase IIa mRNA, complete cds Length = 810 Score = 77.8 bits (39), Expect = 4e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 250 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 309 |||||||| |||||||| || || | ||||| ||||| ||||| | ||||| |||||| Sbjct: 263 tatatgacaaaatatgaacgtgctagaatcctgggcactcgtgcactccagatcagcatg 322 Query: 310 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaa 368 |||||||| || ||||||||| | ||||| ||||||||||| || |||||||| ||||| Sbjct: 323 aatgctcctgtgatggttgagttggagggggaaactgatccactcgagattgcaatgaa 381
>ref|XM_477992.1| Oryza sativa (japonica cultivar-group), mRNA Length = 414 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/108 (85%), Gaps = 4/108 (3%) Strand = Plus / Plus Query: 250 tatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatg 309 |||||||| ||||| ||||| |||||||||||||| |||| ||| ||||||||| ||| Sbjct: 137 tatatgacaaaatacgagcgtgcacgcatccttggtacac-tgccttgcagata---atg 192 Query: 310 aatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||||| |||||||| |||||||| || || |||||||| |||||| Sbjct: 193 aatgctcttgttatggtcgagcttgatggggagactgatccacttgag 240
>gb|BT014606.1| Lycopersicon esculentum clone 134086R, mRNA sequence Length = 652 Score = 75.8 bits (38), Expect = 1e-10 Identities = 119/146 (81%) Strand = Plus / Plus Query: 298 cagataagcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 ||||| ||||||||||| || || ||||||||||| || || |||||||| || |||||| Sbjct: 315 cagatcagcatgaatgcacctgtgatggttgagctggaaggagaaactgacccacttgag 374 Query: 358 attgccatgaaagaactgagagcacgcaagatccccttcacgattaggcggtacttacct 417 ||||| |||||||| || ||| | ||||| || ||||| ||| | || ||||| ||| Sbjct: 375 attgcaatgaaagagctccgagagaggaagataccattcacaattcgccgttacttgcct 434 Query: 418 gatggaagctatgaggactggggagt 443 |||||||| ||||| || |||||||| Sbjct: 435 gatggaagttatgaagattggggagt 460
>gb|DQ455231.1| Medicago truncatula cDNA-AFLP fragment BC43M13_162 sequence Length = 285 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 409 tacttacctgatggaagctatgaggactggggagtcgacgagctcattgtggaggactcg 468 ||||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||| Sbjct: 27 tacttgcctgatggaagctatgaagattggggagttgatgagctgattgtggaagactcc 86 Query: 469 tggaag 474 |||||| Sbjct: 87 tggaag 92
>gb|AC006955.6| Arabidopsis thaliana chromosome 2 clone F28I8 map RNS1, complete sequence Length = 116217 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 |||||||||||||| |||||||||||| | |||||||| |||||||| |||||| Sbjct: 109669 agcatgaatgctcctgttatggttgagttggagggtgagactgatccacttgag 109722 Score = 46.1 bits (23), Expect = 0.13 Identities = 44/51 (86%) Strand = Plus / Plus Query: 252 tatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 302 |||||| || ||||| || ||||| ||||| ||||| |||||||||||||| Sbjct: 109531 tatgactaagtatgaacgtgcacgtatcctcggcactcgtgctttgcagat 109581 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 67 atggcggacgacgattacaatgaagt 92 ||||| |||||||||||||||||||| Sbjct: 108973 atggctgacgacgattacaatgaagt 108998
>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15 Length = 81347 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Plus Query: 304 agcatgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgag 357 |||||||||||||| || ||||||||||| |||||||| |||||||| |||||| Sbjct: 6912 agcatgaatgctcctgtcatggttgagctagagggtgagactgatccacttgag 6965 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 229 cgtccacgcaatacaacaaaatatatgaccaaatatgagcgggcacgcatccttggcaca 288 ||||||||||| || |||| | ||||||||| |||||||| || || ||||| ||||| Sbjct: 6749 cgtccacgcaaaacgtcaaagtttatgaccaagtatgagcgtgctcgtatcctcggcact 6808 Query: 289 cgtgctttgcagat 302 || ||||||||||| Sbjct: 6809 cgcgctttgcagat 6822 Score = 40.1 bits (20), Expect = 8.2 Identities = 47/56 (83%) Strand = Plus / Plus Query: 430 gaggactggggagtcgacgagctcattgtggaggactcgtggaagcgtcaagttgg 485 ||||| |||||||| || || || || ||||| ||||| ||||| ||||||||||| Sbjct: 7219 gaggaatggggagttgatgaactgatcgtggaagactcatggaaacgtcaagttgg 7274
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 245 caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 304 |||| |||||||| ||||| ||||| |||||||||||| | |||||||| |||||||||| Sbjct: 20463019 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 20463078 Query: 305 g 305 | Sbjct: 20463079 g 20463079 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 304 agcatgaatgctccagttatggttgagcttga 335 |||||||||||||| |||||||| |||||||| Sbjct: 20463171 agcatgaatgctcctgttatggtcgagcttga 20463202 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||| ||||||||||| |||||| |||| ||||||| Sbjct: 20462791 ggtacgaggatgagcccccagaacctgagattgagg 20462826
>dbj|AP004463.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0456B03 Length = 152973 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 245 caaaatatatgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataa 304 |||| |||||||| ||||| ||||| |||||||||||| | |||||||| |||||||||| Sbjct: 93649 caaagtatatgacaaaatacgagcgtgcacgcatccttagtacacgtgccttgcagataa 93708 Query: 305 g 305 | Sbjct: 93709 g 93709 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 304 agcatgaatgctccagttatggttgagcttga 335 |||||||||||||| |||||||| |||||||| Sbjct: 93801 agcatgaatgctcctgttatggtcgagcttga 93832 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 101 ggtatgaggatgagcctccagaagctgatattgagg 136 |||| ||||||||||| |||||| |||| ||||||| Sbjct: 93421 ggtacgaggatgagcccccagaacctgagattgagg 93456
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 905587 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 905528 Query: 314 ctcc 317 |||| Sbjct: 905527 ctcc 905524 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 903612 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 903553 Query: 314 ctcc 317 |||| Sbjct: 903552 ctcc 903549
>gb|AC023489.8| Trypanosoma brucei chromosome 4 clone RPCI93-26G5, complete sequence Length = 79024 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 29577 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 29518 Query: 314 ctcc 317 |||| Sbjct: 29517 ctcc 29514 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 27602 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 27543 Query: 314 ctcc 317 |||| Sbjct: 27542 ctcc 27539
>ref|XM_820271.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA polymerase subunit (Tb927.4.3510) partial mRNA Length = 435 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 314 ctcc 317 |||| Sbjct: 248 ctcc 251
>ref|XM_820269.1| Trypanosoma brucei TREU927 clone RPCI93-26G5 DNA-directed RNA polymerase subunit (Tb927.4.3490) partial mRNA Length = 435 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 188 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 247 Query: 314 ctcc 317 |||| Sbjct: 248 ctcc 251
>emb|AM167553.1| Trypanosoma brucei brucei mRNA for RNA polymerase subunit 2RPB6 (2RPB6 gene), strain 427 Length = 596 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaatg 313 |||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || ||||||| Sbjct: 265 tgacgaaatacgagagggcccgcatccttgggacacgtgcattgcagattagtatgaatg 324 Query: 314 ctcc 317 |||| Sbjct: 325 ctcc 328
>ref|XM_798051.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053506199.5) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_801182.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507673.65) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802949.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.90) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802952.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.44) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_802954.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507159.65) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_807299.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507485.34) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>ref|XM_807301.1| Trypanosoma cruzi strain CL Brener DNA-directed RNA polymerase subunit (Tc00.1047053507485.15) partial mRNA Length = 435 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 254 tgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagataagcatgaa 311 |||| ||||| |||||||| ||||||||||||||||| || ||||||| |||||||| Sbjct: 188 tgacaaaatacgagcgggcccgcatccttggcacacgggcgctgcagatcagcatgaa 245
>gb|DQ215323.1| Taeniopygia guttata clone 0058P0006G06 DNA directed RNA polymerase II polypeptide F variant 2-like mRNA, complete sequence Length = 543 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 358 attgccatgaaagaactgagagcacgcaagatcccc 393 ||||||||||||||||| | |||||||||||||||| Sbjct: 283 attgccatgaaagaactcaaagcacgcaagatcccc 318
>gb|DQ215322.1| Taeniopygia guttata clone 0058P0019A05 DNA directed RNA polymerase II polypeptide F variant 1-like mRNA, complete sequence Length = 553 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 358 attgccatgaaagaactgagagcacgcaagatcccc 393 ||||||||||||||||| | |||||||||||||||| Sbjct: 284 attgccatgaaagaactcaaagcacgcaagatcccc 319
>ref|XM_386859.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06683.1) partial mRNA Length = 420 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 277 atccttggcacacgtgctttgcagataagcatgaatgc 314 ||||| |||||||| ||||||||||| ||||||||||| Sbjct: 271 atcctcggcacacgcgctttgcagattagcatgaatgc 308
>emb|AJ251211.1|GGA251211 Gallus gallus mRNA for RNA polymerase common subunit RPB6 (RPB6 gene) Length = 543 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 357 gattgccatgaaagaactgagagcacgcaagat 389 |||||||||||||||||| | |||||||||||| Sbjct: 291 gattgccatgaaagaactcaaagcacgcaagat 323
>ref|NM_204734.1| Gallus gallus polymerase (RNA) II (DNA directed) polypeptide F (POLR2F), mRNA Length = 543 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 357 gattgccatgaaagaactgagagcacgcaagat 389 |||||||||||||||||| | |||||||||||| Sbjct: 291 gattgccatgaaagaactcaaagcacgcaagat 323
>gb|AY391257.1| Tetrahymena bergeri heat shock protein 90 gene, partial cds Length = 1683 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 195 tgaaggtgaagaaaaggaacaggaaaagactg 226 ||||| ||||||||||||| |||||||||||| Sbjct: 591 tgaagatgaagaaaaggaaaaggaaaagactg 622
>ref|XM_416631.1| PREDICTED: Gallus gallus similar to MGC53544 protein (LOC418417), mRNA Length = 1335 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 54 ggcggcgggagccatggcggacg 76 ||||||||||||||||||||||| Sbjct: 114 ggcggcgggagccatggcggacg 136
>ref|XM_706954.1| Candida albicans SC5314 RNA polymerase I, II and III subunit (CaO19.10166), mRNA Length = 474 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 308 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 350 ||||||||||||| ||||||| |||| |||||||||||||| Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356
>ref|XM_706933.1| Candida albicans SC5314 putative subunit common to RNA polymerase I, II and III (CaO19.2643), mRNA Length = 474 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 308 tgaatgctccagttatggttgagcttgagggtgaaactgatcc 350 ||||||||||||| ||||||| |||| |||||||||||||| Sbjct: 314 tgaatgctccagtattggttgatattgaaggtgaaactgatcc 356
>ref|XM_515126.1| PREDICTED: Pan troglodytes similar to DNA directed RNA polymerase II polypeptide F; DNA directed RNA polymerase II 14.4 kda polypeptide (LOC458824), mRNA Length = 573 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 439 gatgggagctatgaagactggggggtggacgagctcat 476
>ref|NM_021974.2| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide F (POLR2F), mRNA Length = 546 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 412 gatgggagctatgaagactggggggtggacgagctcat 449
>gb|BC003582.1| Homo sapiens polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:2669 IMAGE:3546712), complete cds Length = 588 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 437 gatgggagctatgaagactggggggtggacgagctcat 474
>emb|AL031587.3|HS1039K5 Human DNA sequence from clone RP5-1039K5 on chromosome 22q12.3-13.2, complete sequence Length = 142723 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 24943 gatgggagctatgaagactggggggtggacgagctcat 24980
>gb|BC083552.1| Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:93368 IMAGE:7190444), complete cds Length = 1895 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||||||||||||||| ||||| || || |||||||| Sbjct: 419 gatggaagctatgaggattggggcgtggatgagctcat 456
>ref|NM_031335.2| Rattus norvegicus polymerase (RNA) II (DNA directed) polypeptide F (Polr2f), mRNA Length = 1895 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||||||||||||||| ||||| || || |||||||| Sbjct: 419 gatggaagctatgaggattggggcgtggatgagctcat 456
>emb|CR860972.1| Pongo pygmaeus mRNA; cDNA DKFZp459P0527 (from clone DKFZp459P0527) Length = 2099 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 428 gatgggagctatgaagactggggggtggacgagctcat 465
>emb|CR608980.1| full-length cDNA clone CS0DD005YG11 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1445 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 410 gatgggagctatgaagactggggggtggacgagctcat 447
>emb|CR457021.1| Homo sapiens full open reading frame cDNA clone RZPDo834H115D for gene POLR2F, polymerase (RNA) II (DNA directed) polypeptide F; complete cds, incl. stopcodon Length = 384 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 334 gatgggagctatgaagactggggggtggacgagctcat 371
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Minus Query: 253 atgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 302 ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 116573 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 116524
>gb|AF006501.4| Homo sapiens chromosome 22q13.1 Cosmid Clone c1155, complete sequence Length = 40129 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 20996 gatgggagctatgaagactggggggtggacgagctcat 21033
>ref|NM_209934.1| Eremothecium gossypii AEL279Cp (AEL279C), mRNA Length = 465 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 253 atgaccaaatatgagcgggcacgcatccttggcacacgtgctttgcagat 302 ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||| Sbjct: 250 atgacgaaatatgagcgcgcacgaatcctcggcacgcgtgcgctgcagat 299
>emb|CR456546.1| Homo sapiens POLR2F full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.POLR2F) Length = 406 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 349 gatgggagctatgaagactggggggtggacgagctcat 386
>emb|Z27113.1|HSRNAP14K H.Sapiens gene for RNA polymerase II subunit 14.4 kD Length = 546 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||| |||||||| |||||||| || ||||||||||| Sbjct: 412 gatgggagctatgaagactggggggtggacgagctcat 449
>dbj|AB017711.1| Rattus norvegicus mRNA for RNA polymerase II, complete cds Length = 470 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Plus Query: 418 gatggaagctatgaggactggggagtcgacgagctcat 455 ||||||||||||||||| ||||| || || |||||||| Sbjct: 379 gatggaagctatgaggattggggcgtggatgagctcat 416
>gb|AY441223.1| Armigeres subalbatus ASAP ID: 41897 RNA polymerase II 18kd subunit mRNA sequence Length = 608 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 320 ttatggttgagcttgagggtgaaactgatcctcttgagattgccatgaa 368 |||||||||| || ||||| ||||| || ||||| ||||||||||||| Sbjct: 375 ttatggttgaactggagggcgaaacggaccctctccagattgccatgaa 423
>ref|NM_027231.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide F (Polr2f), mRNA Length = 612 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 388 agctatgaggactggggcgtggacgagct 416
>ref|XM_766473.1| Giardia lamblia ATCC 50803 axoneme-associated protein (GLP_630_63094_59807) partial mRNA Length = 3288 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 tcgacgagctcattgtggagg 463 ||||||||||||||||||||| Sbjct: 2279 tcgacgagctcattgtggagg 2259
>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG island, complete sequence Length = 191652 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 aatatatgaccaaatatgagc 268 ||||||||||||||||||||| Sbjct: 31019 aatatatgaccaaatatgagc 30999
>gb|BC024419.1| Mus musculus polymerase (RNA) II (DNA directed) polypeptide F, mRNA (cDNA clone MGC:36565 IMAGE:4983359), complete cds Length = 612 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 388 agctatgaggactggggcgtggacgagct 416
>dbj|AK165600.1| Mus musculus B cells CRL-1669 BCL1 Clone 13.20-3B3 cDNA, RIKEN full-length enriched library, clone:G430042P11 product:DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 546 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 415 agctatgaggactggggcgtggacgagct 443
>dbj|AK169434.1| Mus musculus 16 days embryo whole body cDNA, RIKEN full-length enriched library, clone:K630068M18 product:DNA-directed RNA polymerase II 14.4 kDa polypeptide (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 543 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 404 agctatgaggactggggcgtggacgagct 432
>dbj|AK007913.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length enriched library, clone:1810060D16 product:DNA-DIRECTED RNA POLYMERASE II 14.4 KDA POLYPEPTIDE (EC 2.7.7.6) (RPB6) (RPB14.4) homolog [Rattus norvegicus], full insert sequence Length = 534 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 403 agctatgaggactggggcgtggacgagct 431
>gb|AF176516.2|AF176516 Mus musculus E2F1-inducible (Eig4) mRNA, complete sequence Length = 1953 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 1822 agctatgaggactggggcgtggacgagct 1850
>dbj|AP001578.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1954F7 Length = 239057 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 202 gaagaaaaggaacaggaaaag 222 ||||||||||||||||||||| Sbjct: 166095 gaagaaaaggaacaggaaaag 166075
>emb|AL591921.6| Mouse DNA sequence from clone RP23-28O11 on chromosome 15, complete sequence Length = 116704 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 424 agctatgaggactggggagtcgacgagct 452 ||||||||||||||||| || |||||||| Sbjct: 100987 agctatgaggactggggcgtggacgagct 100959
>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence Length = 202099 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gtgaagaaaaggaacaggaa 219 |||||||||||||||||||| Sbjct: 126242 gtgaagaaaaggaacaggaa 126261
>ref|XM_611870.2| PREDICTED: Bos taurus similar to Ras GTPase-activating-like protein IQGAP1 (p195) (LOC532714), mRNA Length = 2963 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 caatgtttagcactgaattg 568 |||||||||||||||||||| Sbjct: 2017 caatgtttagcactgaattg 1998
>ref|XM_420148.1| PREDICTED: Gallus gallus similar to RIKEN cDNA A630033H20 gene (LOC422147), mRNA Length = 1343 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 tgatgtggtagggggtgaag 199 |||||||||||||||||||| Sbjct: 969 tgatgtggtagggggtgaag 950
>ref|XM_864900.1| PREDICTED: Bos taurus similar to DNA directed RNA polymerase II polypeptide F (LOC613788), mRNA Length = 541 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagctcat 455 ||||| || |||||||| |||||||||||||| Sbjct: 415 agctacgaagactggggcgtcgacgagctcat 446
>gb|AC092140.4| Homo sapiens chromosome 16 clone RP11-413H22, complete sequence Length = 193188 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 tatgccaatgtttagcactg 563 |||||||||||||||||||| Sbjct: 166073 tatgccaatgtttagcactg 166054
>ref|XM_856062.1| PREDICTED: Canis familiaris similar to DNA directed RNA polymerase II polypeptide F, transcript variant 2 (LOC474512), mRNA Length = 516 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagctcat 455 |||||||| |||||||| || ||||||||||| Sbjct: 390 agctatgaagactggggggtagacgagctcat 421
>ref|XM_531740.2| PREDICTED: Canis familiaris similar to DNA directed RNA polymerase II polypeptide F, transcript variant 1 (LOC474512), mRNA Length = 541 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagctcat 455 |||||||| |||||||| || ||||||||||| Sbjct: 411 agctatgaagactggggggtagacgagctcat 442
>gb|AC122018.4| Mus musculus BAC clone RP24-361O20 from chromosome 10, complete sequence Length = 173543 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gaagaaaaggaacaggaaaa 221 |||||||||||||||||||| Sbjct: 132891 gaagaaaaggaacaggaaaa 132872
>emb|CR702791.2|CNS0G583 Tetraodon nigroviridis full-length cDNA Length = 1252 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tacaacaaaatatatgacca 259 |||||||||||||||||||| Sbjct: 1181 tacaacaaaatatatgacca 1162
>emb|CR689276.2|CNS0FUSO Tetraodon nigroviridis full-length cDNA Length = 1251 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tacaacaaaatatatgacca 259 |||||||||||||||||||| Sbjct: 1204 tacaacaaaatatatgacca 1185
>emb|CR682388.2|CNS0FPHC Tetraodon nigroviridis full-length cDNA Length = 691 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tacaacaaaatatatgacca 259 |||||||||||||||||||| Sbjct: 648 tacaacaaaatatatgacca 629
>emb|Z93931.1|HS438G17 Human DNA sequence from clone RP3-438G17 on chromosome 6q22 Contains a high mobility group protein pseudogene, complete sequence Length = 148198 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 gatgatgtggtagggggtga 197 |||||||||||||||||||| Sbjct: 65018 gatgatgtggtagggggtga 65037
>emb|AL392086.14| Human DNA sequence from clone RP11-799O21 on chromosome 10 Contains the 3' end of a novel gene and a novel gene, complete sequence Length = 220225 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 gaggaaggggttgaagaaga 152 |||||||||||||||||||| Sbjct: 114436 gaggaaggggttgaagaaga 114417
>ref|XM_782868.1| PREDICTED: Strongylocentrotus purpuratus similar to polymerase II (LOC582938), mRNA Length = 375 Score = 40.1 bits (20), Expect = 8.2 Identities = 56/68 (82%) Strand = Plus / Plus Query: 307 atgaatgctccagttatggttgagcttgagggtgaaactgatcctcttgagattgccatg 366 |||||||| || ||||||||||| || || || || || |||||| | ||||||| ||| Sbjct: 217 atgaatgcacctgttatggttgaactggaaggagagaccgatcctttacagattgctatg 276 Query: 367 aaagaact 374 |||||||| Sbjct: 277 aaagaact 284
>gb|DQ443743.1| Transmissible gastroenteritis virus strain SC-Y, complete genome Length = 28590 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gttgaagaagatcctgagaa 161 |||||||||||||||||||| Sbjct: 3327 gttgaagaagatcctgagaa 3346
>emb|AJ271965.2|TGA271965 Transmissible gastroenteritis virus complete genome, genomic RNA Length = 28586 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gttgaagaagatcctgagaa 161 |||||||||||||||||||| Sbjct: 3327 gttgaagaagatcctgagaa 3346
>emb|CR749748.11| Zebrafish DNA sequence from clone DKEY-246E1 in linkage group 22, complete sequence Length = 53266 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ggtgaaggtgaagaaaagga 212 |||||||||||||||||||| Sbjct: 19628 ggtgaaggtgaagaaaagga 19647
>gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, complete sequence Length = 166218 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 aaaggaacaggaaaagactg 226 |||||||||||||||||||| Sbjct: 31384 aaaggaacaggaaaagactg 31403
>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence Length = 220137 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gtgaagaaaaggaacaggaa 219 |||||||||||||||||||| Sbjct: 175901 gtgaagaaaaggaacaggaa 175882
>dbj|AB254449.1| Phragmites australis PhaHAK2-e mRNA for potassium transporter, complete cds, strain: Enchi Length = 2429 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gggagccatggcggacgacg 79 |||||||||||||||||||| Sbjct: 57 gggagccatggcggacgacg 76
>dbj|AB254448.1| Phragmites australis PhaHAK2-n mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2430 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gggagccatggcggacgacg 79 |||||||||||||||||||| Sbjct: 57 gggagccatggcggacgacg 76
>dbj|AB254447.1| Phragmites australis PhaHAK2-u mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2493 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 gggagccatggcggacgacg 79 |||||||||||||||||||| Sbjct: 57 gggagccatggcggacgacg 76
>gb|AC092995.7| Homo sapiens 3 BAC RP11-692L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115749 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 aaaatatatgaccaaatatg 265 |||||||||||||||||||| Sbjct: 70712 aaaatatatgaccaaatatg 70731
>dbj|AB229799.1| Aspergillus oryzae cDNA, contig sequence: AoEST6683 Length = 527 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 atgaccaaatatgagcgggc 272 |||||||||||||||||||| Sbjct: 380 atgaccaaatatgagcgggc 399
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 atgaccaaatatgagcgggc 272 |||||||||||||||||||| Sbjct: 2173736 atgaccaaatatgagcgggc 2173755
>gb|AC115111.2| Homo sapiens BAC clone RP11-286J9 from 4, complete sequence Length = 113684 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gaagaaaaggaacaggaaaa 221 |||||||||||||||||||| Sbjct: 76769 gaagaaaaggaacaggaaaa 76750
>gb|DQ390461.1| Transmissible gastroenteritis virus isolate SC-Y replicase 1a (orf1a) gene, complete cds; and replicase 1b (orf1b) gene, partial cds Length = 20368 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gttgaagaagatcctgagaa 161 |||||||||||||||||||| Sbjct: 3327 gttgaagaagatcctgagaa 3346
>emb|BX088704.7| Zebrafish DNA sequence from clone CH211-208M6 in linkage group 7, complete sequence Length = 209042 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gggtgaaggtgaagaaaagg 211 |||||||||||||||||||| Sbjct: 5436 gggtgaaggtgaagaaaagg 5417
>gb|AC114533.17| Mus musculus chromosome 1, clone RP24-255G23, complete sequence Length = 147505 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgatgatgtggtagggggtg 196 |||||||||||||||||||| Sbjct: 7253 tgatgatgtggtagggggtg 7234
>gb|BC108153.1| Bos taurus cDNA clone MGC:133639 IMAGE:8049047, complete cds Length = 596 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 424 agctatgaggactggggagtcgacgagctcat 455 ||||| || |||||||| |||||||||||||| Sbjct: 420 agctacgaagactggggcgtcgacgagctcat 451
>gb|AC009155.3|AC009155 Homo sapiens chromosome 16 clone RP11-5A3, complete sequence Length = 143860 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 544 tatgccaatgtttagcactg 563 |||||||||||||||||||| Sbjct: 9918 tatgccaatgtttagcactg 9899
>emb|Z34093.1|TGVPOLL Transmissible gastroenteritis virus (Purdue-115) mRNA for polymerase locus Length = 20600 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gttgaagaagatcctgagaa 161 |||||||||||||||||||| Sbjct: 3327 gttgaagaagatcctgagaa 3346
>emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-398E10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 catgaaagaactgagagcac 382 |||||||||||||||||||| Sbjct: 59904 catgaaagaactgagagcac 59923
>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence Length = 209209 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 aaaggaacaggaaaagactg 226 |||||||||||||||||||| Sbjct: 15161 aaaggaacaggaaaagactg 15142
>gb|AC099702.12| Mus musculus chromosome 1, clone RP23-218F13, complete sequence Length = 195716 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tgatgatgtggtagggggtg 196 |||||||||||||||||||| Sbjct: 1824 tgatgatgtggtagggggtg 1843
>emb|AL133477.16| Human DNA sequence from clone RP11-172F4 on chromosome 9q22.2-31.1 Contains the 3' end of the CDC14B gene for the CDC14 cell division cycle 14 homolog B (S. cerevisiae) the HABP4 gene for hyaluronan binding protein 4, the gene for a novel protein similar to a zinc finger protein, TINP1 pseudogene, a novel gene and three CpG islands, complete sequence Length = 139118 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 caaaatatatgaccaaatat 264 |||||||||||||||||||| Sbjct: 87919 caaaatatatgaccaaatat 87938
>gb|DQ288927.1| Avian infectious bronchitis virus isolate SAIBK, complete genome Length = 27534 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 tataatatgccaatgtttagcact 562 ||||||||||||| |||||||||| Sbjct: 17407 tataatatgccaaggtttagcact 17384
>emb|AL772255.12| Mouse DNA sequence from clone RP23-172B16 on chromosome 2, complete sequence Length = 205973 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 agaaaaggaacaggaaaaga 223 |||||||||||||||||||| Sbjct: 155124 agaaaaggaacaggaaaaga 155143
>gb|M26939.1|HUMCOL3A1A Human collagen type-III (COL3A1) gene, 5' end Length = 2275 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ggtgaaggtgaagaaaagga 212 |||||||||||||||||||| Sbjct: 487 ggtgaaggtgaagaaaagga 506
>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete sequence Length = 144239 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 atggggtatgaggatgagcc 116 |||||||||||||||||||| Sbjct: 129275 atggggtatgaggatgagcc 129256 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,887,346 Number of Sequences: 3902068 Number of extensions: 4887346 Number of successful extensions: 98467 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98029 Number of HSP's gapped (non-prelim): 422 length of query: 602 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 579 effective length of database: 17,143,297,704 effective search space: 9925969370616 effective search space used: 9925969370616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
