ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak0b12 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 81.3 bits (199), Expect(2) = 2e-27 Identities = 45/75 (60%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 VVTGNDFSTLYAPLIRDGRME FYWAP RDD +G + P Q Sbjct: 271 VVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQ 330 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 331 --SIDFFGALRARVY 343 Score = 69.7 bits (169), Expect = 2e-12 Identities = 39/59 (66%), Positives = 40/59 (67%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P RIGVCKGIFQTDNVSD SVVKIVDT P + F L DDEVRKWVGST Sbjct: 297 PTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRAR-VYDDEVRKWVGST 354 Score = 59.3 bits (142), Expect(2) = 2e-27 Identities = 28/29 (96%), Positives = 28/29 (96%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 GIENIGK LVNSRDGPVTFEQPKMTVEKL Sbjct: 355 GIENIGKRLVNSRDGPVTFEQPKMTVEKL 383
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 79.7 bits (195), Expect(2) = 5e-25 Identities = 44/75 (58%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP RDD +G + P Q Sbjct: 271 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQ 330 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 331 --SIDFFGALRARVY 343 Score = 58.5 bits (140), Expect = 4e-09 Identities = 31/59 (52%), Positives = 36/59 (61%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P R+GVCKGIF+TDNV D +VKIVD+ P + F L DDEVRKWV T Sbjct: 297 PTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRAR-VYDDEVRKWVSDT 354 Score = 52.4 bits (124), Expect(2) = 5e-25 Identities = 23/29 (79%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+ENIGK LVNSR+GP FEQPKMT+EKL Sbjct: 355 GVENIGKRLVNSREGPPEFEQPKMTIEKL 383
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 78.6 bits (192), Expect(2) = 2e-24 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 268 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQ 327 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 328 --SIDFFGALRARVY 340 Score = 59.7 bits (143), Expect = 2e-09 Identities = 32/57 (56%), Positives = 37/57 (64%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVG 252 P RIGVCKGIF+TDNV D +VV++VDT P + F L DDEVRKWVG Sbjct: 294 PTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRAR-VYDDEVRKWVG 349 Score = 51.2 bits (121), Expect(2) = 2e-24 Identities = 22/29 (75%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+ENI K LVNSR+GP TF+QPKMT+EKL Sbjct: 352 GVENISKRLVNSREGPPTFDQPKMTIEKL 380
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 79.0 bits (193), Expect(2) = 3e-24 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYR-CLQGYLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D C+ + P Q Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQ 340 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 341 --SIDFFGALRARVY 353 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/56 (48%), Positives = 34/56 (60%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWV 249 P RIGVC GIF++DNV+ +VK+VDT P + F L DDEVRKW+ Sbjct: 307 PTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRAR-VYDDEVRKWI 361 Score = 50.4 bits (119), Expect(2) = 3e-24 Identities = 21/29 (72%), Positives = 27/29 (93%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+++IGK LVNS++GP TFEQPKMT+EKL Sbjct: 365 GVDSIGKKLVNSKEGPPTFEQPKMTIEKL 393
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 78.6 bits (192), Expect(2) = 7e-24 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 280 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQ 339 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 340 --SIDFFGALRARVY 352 Score = 58.2 bits (139), Expect = 5e-09 Identities = 32/59 (54%), Positives = 37/59 (62%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P RIGVCKGIF+TDNV + +VVKIVD+ P + F L DDEVRKWV T Sbjct: 306 PTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRAR-VYDDEVRKWVSGT 363 Score = 49.7 bits (117), Expect(2) = 7e-24 Identities = 23/29 (79%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 GIE IG+ L+NSRDGP TFEQPKMT+EKL Sbjct: 364 GIELIGEKLLNSRDGPPTFEQPKMTLEKL 392
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 81.3 bits (199), Expect(2) = 7e-24 Identities = 44/75 (58%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + HP Q Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQ 344 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 345 --SIDFFGALRARVY 357 Score = 48.5 bits (114), Expect = 4e-06 Identities = 26/56 (46%), Positives = 33/56 (58%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWV 249 P RIGVCKGIF+TD V + +V++VD P + F L DDEVRKW+ Sbjct: 311 PTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRAR-VYDDEVRKWI 365 Score = 47.0 bits (110), Expect(2) = 7e-24 Identities = 18/29 (62%), Positives = 27/29 (93%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G++++GK LVNS++GP TF+QPKMT++KL Sbjct: 369 GVDSVGKKLVNSKEGPPTFDQPKMTLDKL 397
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 78.6 bits (192), Expect(2) = 2e-23 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 277 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQ 336 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 337 --SIDFFGALRARVY 349 Score = 53.5 bits (127), Expect = 1e-07 Identities = 29/59 (49%), Positives = 35/59 (59%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P RIGVCKGIF+TD V + VV++VDT P + F L DDEVR+WV T Sbjct: 303 PTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRAR-VYDDEVRRWVSET 360 Score = 48.5 bits (114), Expect(2) = 2e-23 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+ENI + LVNS++GP TFEQPK+T+EKL Sbjct: 361 GVENIARKLVNSKEGPPTFEQPKITIEKL 389
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 77.8 bits (190), Expect(2) = 2e-23 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQ 340 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 341 --SIDFFGALRARVY 353 Score = 54.3 bits (129), Expect = 7e-08 Identities = 29/56 (51%), Positives = 34/56 (60%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWV 249 P RIGVCKGIF+TDNV + +VK+VD P + F L DDEVRKWV Sbjct: 307 PTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRAR-VYDDEVRKWV 361 Score = 48.9 bits (115), Expect(2) = 2e-23 Identities = 20/29 (68%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G++ IGK LVNS++GP TFEQPKMT++KL Sbjct: 365 GVDTIGKKLVNSKEGPPTFEQPKMTIDKL 393
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 79.0 bits (193), Expect(2) = 3e-23 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 281 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQ 340 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 341 --SIDFFGALRARVY 353 Score = 47.4 bits (111), Expect(2) = 3e-23 Identities = 19/29 (65%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G++ IGK LVNS++GP +FEQPKMT++KL Sbjct: 365 GVDTIGKKLVNSKEGPPSFEQPKMTIDKL 393
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 77.8 bits (190), Expect(2) = 3e-23 Identities = 43/75 (57%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D G + P Q Sbjct: 279 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQ 338 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 339 --SIDFFGALRARVY 351 Score = 48.1 bits (113), Expect(2) = 3e-23 Identities = 19/29 (65%), Positives = 26/29 (89%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G++N+GK LVNS+DGP FEQP+MT++KL Sbjct: 363 GVDNVGKKLVNSKDGPPVFEQPEMTLQKL 391 Score = 47.0 bits (110), Expect = 1e-05 Identities = 28/58 (48%), Positives = 31/58 (53%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGS 255 P RIGVC GIF+TD V VVK+VD P + F L DEVRKWV S Sbjct: 305 PTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRAR-VYHDEVRKWVNS 361
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 78.6 bits (192), Expect(2) = 3e-23 Identities = 43/75 (57%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQ 344 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 345 --SIDFFGALRARVY 357 Score = 59.3 bits (142), Expect = 2e-09 Identities = 32/59 (54%), Positives = 37/59 (62%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P RIGVCKGIF+TDNV + +V+KIVDT P + F L DDEVRKWV T Sbjct: 311 PTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRAR-VYDDEVRKWVSGT 368 Score = 47.4 bits (111), Expect(2) = 3e-23 Identities = 23/29 (79%), Positives = 24/29 (82%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 GIE IG L+NS DGP TFEQPKMTVEKL Sbjct: 369 GIEAIGDKLLNSFDGPPTFEQPKMTVEKL 397
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 77.4 bits (189), Expect(2) = 6e-23 Identities = 43/75 (57%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP R+D G + P Q Sbjct: 285 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQ 344 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 345 --SIDFFGALRARVY 357 Score = 53.5 bits (127), Expect = 1e-07 Identities = 31/59 (52%), Positives = 33/59 (55%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWVGST 258 P RIGVC GIF+TDNV VVKIVD P + F L DDEVRKWV T Sbjct: 311 PTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRAR-VYDDEVRKWVSGT 368 Score = 47.8 bits (112), Expect(2) = 6e-23 Identities = 22/29 (75%), Positives = 24/29 (82%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 GIE IG L+NS DGP TFEQPKMT+EKL Sbjct: 369 GIEKIGDKLLNSFDGPPTFEQPKMTIEKL 397
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 76.6 bits (187), Expect(2) = 1e-22 Identities = 42/75 (56%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 + TGNDFSTLYAPLIRDGRME FYWAP R+D +G + P Q Sbjct: 281 ICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQ 340 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 341 --SIDFFGALRARVY 353 Score = 47.4 bits (111), Expect(2) = 1e-22 Identities = 21/29 (72%), Positives = 24/29 (82%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+E IGK LVNSR+GP FEQP+MT EKL Sbjct: 365 GVEKIGKRLVNSREGPPVFEQPEMTYEKL 393
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 80.1 bits (196), Expect(2) = 3e-22 Identities = 44/75 (58%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYWAP RDD +G + P Q Sbjct: 283 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQ 342 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 343 --SIDFFGALRARVY 355 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/56 (46%), Positives = 33/56 (58%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKWV 249 P R+GVCKGIF+TD V + + K+VDT P + F L DDEVRKW+ Sbjct: 309 PTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRAR-VYDDEVRKWI 363 Score = 42.7 bits (99), Expect(2) = 3e-22 Identities = 17/29 (58%), Positives = 25/29 (86%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G++ GK LVNS++GP TF+QPKM+++KL Sbjct: 367 GVDATGKKLVNSKEGPPTFDQPKMSLDKL 395
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 76.3 bits (186), Expect(2) = 3e-22 Identities = 42/75 (56%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRM+ FYWAP R+D G + P Q Sbjct: 278 IVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQ 337 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 338 --SIDFFGALRARVY 350 Score = 47.8 bits (112), Expect = 7e-06 Identities = 26/55 (47%), Positives = 31/55 (56%) Frame = +1 Query: 82 PXVTTRIGVCKGIFQTDNVSDXSVVKIVDTLPRXNPLTFSVLCVLGCTDDEVRKW 246 P RIG+C GIF+TD V +VK+VDT P + F L DDEVRKW Sbjct: 304 PTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRAR-VYDDEVRKW 357 Score = 46.6 bits (109), Expect(2) = 3e-22 Identities = 19/29 (65%), Positives = 25/29 (86%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G+E IG+ LVNS++ P TF+QPKMT+EKL Sbjct: 362 GVERIGRNLVNSKESPPTFDQPKMTIEKL 390
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 73.6 bits (179), Expect(2) = 2e-16 Identities = 39/75 (52%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYW P RD+ + G + P+Q Sbjct: 154 IVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQ 213 Query: 180 XXSIDFFGALRARVY 224 SIDFF ALR+R+Y Sbjct: 214 --SIDFFSALRSRIY 226 Score = 29.6 bits (65), Expect(2) = 2e-16 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 260 GIENIGKXLVNSRDGPVTFEQPKMTVEKL 346 G EN+ +VNS +GP F++P T+ L Sbjct: 238 GYENVSLRVVNSLEGPPAFKKPDFTLSHL 266
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 74.7 bits (182), Expect = 5e-14 Identities = 40/75 (53%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYRCLQG-YLPXXXXXXXXXXXXXXHPSQ 179 +VTGNDFSTLYAPLIRDGRME FYW P RDD + G + P Q Sbjct: 154 IVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQ 213 Query: 180 XXSIDFFGALRARVY 224 SIDFF ALR+R+Y Sbjct: 214 --SIDFFSALRSRIY 226
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 73.6 bits (179), Expect = 1e-13 Identities = 41/75 (54%), Positives = 45/75 (60%), Gaps = 1/75 (1%) Frame = +3 Query: 3 VVTGNDFSTLYAPLIRDGRMEXFYWAPXRDDPYR-CLQGYLPXXXXXXXXXXXXXXHPSQ 179 V TGNDFSTLYAPLIRDGRME +YW P R+D C+ + P Q Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313 Query: 180 XXSIDFFGALRARVY 224 SIDFFGALRARVY Sbjct: 314 --SIDFFGALRARVY 326
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast (RuBisCO activase) (RA) (Fragments) Length = 32 Score = 30.8 bits (68), Expect(2) = 0.13 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +2 Query: 296 RDGPVTFEQPKMTVEK 343 R+GP TFEQP MT+EK Sbjct: 17 REGPPTFEQPAMTIEK 32 Score = 21.9 bits (45), Expect(2) = 0.13 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +3 Query: 186 SIDFFGALR 212 SIDFFGALR Sbjct: 9 SIDFFGALR 17
>IF6_SCHPO (O94476) Eukaryotic translation initiation factor 6 (eIF-6)| Length = 244 Score = 32.3 bits (72), Expect = 0.30 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = +1 Query: 16 TISRRSTLL*SVMVV--WRXSTGLPXVTTRIGVCKGIFQTDNVSDXSVVKIVDTL 174 TI+R S ++ + +VV W GL T + VC+ IF+ + +++ DTL Sbjct: 185 TINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISNRDTL 239
>ESR2_CALJA (Q95171) Estrogen receptor beta (ER-beta)| Length = 530 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -3 Query: 306 GPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQW 187 GP R+ TS ++S PG PLA + +AE +KS W Sbjct: 68 GPGRQITSPNMLWSTPGHLSPLAVHHQLSHLYAEPQKSPW 107
>ESR2_SHEEP (Q9TU15) Estrogen receptor beta (ER-beta)| Length = 527 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 306 GPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQW 187 GP R+ TS ++ PG PLA + +AE +KS W Sbjct: 65 GPGRQTTSPNVLWPTPGHLSPLAIHCQSSLLYAEPQKSPW 104
>ESR2_BOVIN (Q9XSB5) Estrogen receptor beta (ER-beta)| Length = 527 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 306 GPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQW 187 GP R+ TS ++ PG PLA + +AE +KS W Sbjct: 65 GPGRQTTSPNVLWPTPGHLSPLAIHCQPSVLYAEPQKSPW 104
>WDR24_MOUSE (Q8CFJ9) WD-repeat protein 24| Length = 790 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = -3 Query: 276 PMFSIPGRADPLAHLIVGTPEHAEHRKSQWIXPGKGVDDLDDRXVTDI 133 P + +P A PL H IV TP EH + + P ++ D + + Sbjct: 563 PEYVLPQEAFPLRHEIVDTPSGPEHLQDKADSPHVSGNEADTASLAPV 610
>TRI45_HUMAN (Q9H8W5) Tripartite motif protein 45 (RING finger protein 99)| Length = 580 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +2 Query: 143 TXLSSRSSTPFPGXIH*LFRCSACSGVPTMRCASGSALPG 262 T + R P G H CS+ G T RCA G +PG Sbjct: 494 TVMVRRKHRPHSGVFHCCTFCSS-GGQKTARCACGGTMPG 532
>ESR2_PIG (Q9XSW2) Estrogen receptor beta (ER-beta)| Length = 526 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 306 GPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQW 187 GP R+ TS ++ PG PLA + +AE +KS W Sbjct: 65 GPGRQATSPNVLWPTPGHLSPLAIHCQPSLLYAEPQKSPW 104
>CN092_MOUSE (Q8BU11) Epidermal Langerhans cell protein LCP1| Length = 619 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/76 (26%), Positives = 28/76 (36%) Frame = -3 Query: 312 VTGPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQWIXPGKGVDDLDDRXVTDI 133 +TGPS F S F P D ++ P +D V+D+ Sbjct: 13 ITGPSHPFLSGAETFHTPSLGD-----------------EEFEIPPISLDSDPSLAVSDV 55 Query: 132 VGLEDTLADTDTGRHG 85 VG D LAD + + G Sbjct: 56 VGHFDDLADPSSSQDG 71
>CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1| Length = 621 Score = 27.7 bits (60), Expect = 7.3 Identities = 20/76 (26%), Positives = 28/76 (36%) Frame = -3 Query: 312 VTGPSREFTSXLPMFSIPGRADPLAHLIVGTPEHAEHRKSQWIXPGKGVDDLDDRXVTDI 133 +TGPS F S F P D ++ P +D V+D+ Sbjct: 13 ITGPSHPFLSGAETFHTPSLGD-----------------EEFEIPPISLDSDPSLAVSDV 55 Query: 132 VGLEDTLADTDTGRHG 85 VG D LAD + + G Sbjct: 56 VGHFDDLADPSSSQDG 71
>RPB7_SOYBN (P46279) DNA-directed RNA polymerase II 19 kDa polypeptide (EC| 2.7.7.6) (RNA polymerase II subunit 5) Length = 176 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 251 ALPGIENIGKXLVNSRDGPVTF 316 A+ GIENIGK L+ G VTF Sbjct: 47 AVTGIENIGKGLIRDGTGFVTF 68
>DNAJ_CLOPE (Q8XIT1) Chaperone protein dnaJ| Length = 387 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Frame = -3 Query: 258 GRADPLAHLIVGTPEHAEHRKSQWI-----XPGKGVDDLDDR 148 GR + H++V P+H + + + G+ VDD+D++ Sbjct: 334 GRGNQYVHMVVEVPKHLNKEQEEALKAFMKASGESVDDIDEK 375
>Y1076_DESVH (P61466) UPF0161 protein DVU1076| Length = 86 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 346 QLLDCHLWLLEGHGPVPRV 290 ++L CH W GH PVP V Sbjct: 57 RILRCHPWCAGGHDPVPPV 75
>ZHX2_MOUSE (Q8C0C0) Zinc fingers and homeoboxes protein 2 (Zinc finger and| homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP) Length = 836 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/66 (24%), Positives = 29/66 (43%) Frame = -3 Query: 279 LPMFSIPGRADPLAHLIVGTPEHAEHRKSQWIXPGKGVDDLDDRXVTDIVGLEDTLADTD 100 +P + G DP + G P A +S+ G+G ++ ++ + D V E T+ + D Sbjct: 746 VPRMKVGG--DPTKDCLAGKPSEATSDRSEGSRDGQGSEENEESGIVDFV--EVTVGEED 801 Query: 99 TGRHGW 82 W Sbjct: 802 AISEKW 807
>TRPD_RHIME (Q92PS0) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)| Length = 337 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -3 Query: 261 PGRADPLAHLIVGTPEHAEHRKSQWIXPGKGVDDLDDRXVTDIVGLED 118 P DPLA ++ +S W+ G+G+D++ VT + L+D Sbjct: 198 PQWVDPLAEVLRDLGS-----ESVWVVHGEGLDEITTTGVTKVAALKD 240
>SWR1_SCHPO (O13682) Helicase swr1 (EC 3.6.1.-)| Length = 1288 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Frame = +1 Query: 226 DDEVRKWV------GSTRNREHWQXAGELAGRARDLRAAKDDSREA 345 DDE K V GST+N E+W+ A A D++AA+ +E+ Sbjct: 1161 DDESLKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQVARKES 1206
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = -3 Query: 189 WIXPGKGVDDLDDRXVTDIVGLEDTLADTDTG 94 W+ G VDD DD + ++VG E+++ + + G Sbjct: 175 WMLLGCEVDDKDDDILLNLVGCENSVTEGEDG 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,677,569 Number of Sequences: 219361 Number of extensions: 861840 Number of successful extensions: 2601 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2488 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2565 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
