ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak0b12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 563 bits (284), Expect = e-157 Identities = 335/347 (96%), Gaps = 5/347 (1%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 1009 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 1010 tggagaagttctactgggctcccacccgtgacga-ccgtatcggtgtctgcaagggtatc 1068 Query: 121 ttccagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccagg 180 |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||| Sbjct: 1069 ttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcgtcgaca-ccttcccagg 1127 Query: 181 annaatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgc 240 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1128 a-caatccattgactttttcggtgctctgcgtgctcgggtgta-cgacgatgaggtgcgc 1185 Query: 241 aagtgggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1186 aagtgggtcggctcta-ccggaatcgagaacattggcaagaggctggtgaactcgcggga 1244 Query: 301 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 347 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 1291
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 563 bits (284), Expect = e-157 Identities = 335/347 (96%), Gaps = 5/347 (1%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 695 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 754 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 755 tggagaagttctactgggctcccacccgtgacga-ccgtatcggtgtctgcaagggtatc 813 Query: 121 ttccagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccagg 180 |||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||| Sbjct: 814 ttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcgtcgaca-ccttcccagg 872 Query: 181 annaatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgc 240 | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 873 a-caatccattgactttttcggtgctctgcgtgctcgggtgta-cgacgatgaggtgcgc 930 Query: 241 aagtgggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 931 aagtgggtcggctcta-ccggaatcgagaacattggcaagaggctggtgaactcgcggga 989 Query: 301 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 347 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 990 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 1036
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 444 bits (224), Expect = e-122 Identities = 320/347 (92%), Gaps = 5/347 (1%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 |||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 20 tcgtcgtcactggtaacgatttctcgacgttgtacgcccctctgatccgtgatggtcgta 79 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct: 80 tggagaagttctactgggctcccacccgcgacga-ccgtatcggtgtctgcaagggtatc 138 Query: 121 ttccagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccagg 180 |||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||| Sbjct: 139 ttccagaccgacaatgtcagcgacgagtccgtcgtcaagatcgtcgaca-ccttcccagg 197 Query: 181 annaatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgc 240 | ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 198 a-caatccatcgactttttcggtgctctgcgtgctcgggtgta-cgacgacgaggtgcgc 255 Query: 241 aagtgggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcggga 300 |||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 256 aagtgggtgacctcta-ccggtatcgagaacattggcaagaagctggtgaactcgcggga 314 Query: 301 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 347 ||| || |||||||| |||||||||||||||||||| |||||||||| Sbjct: 315 cggaccagtgacctttgagcagccaaagatgacagtggagaagctgc 361
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 444 bits (224), Expect = e-122 Identities = 320/347 (92%), Gaps = 5/347 (1%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 |||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| Sbjct: 870 tcgtcgtcactggtaacgatttctcgacgttgtacgcccctctgatccgtgatggtcgta 929 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| Sbjct: 930 tggagaagttctactgggctcccacccgcgacga-ccgtatcggtgtctgcaagggtatc 988 Query: 121 ttccagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccagg 180 |||||||||||||||||||| ||||| || ||||||||||||||||||| |||||||||| Sbjct: 989 ttccagaccgacaatgtcagcgacgagtccgtcgtcaagatcgtcgaca-ccttcccagg 1047 Query: 181 annaatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgc 240 | ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 1048 a-caatccatcgactttttcggtgctctgcgtgctcgggtgta-cgacgacgaggtgcgc 1105 Query: 241 aagtgggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcggga 300 |||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 1106 aagtgggtgacctcta-ccggtatcgagaacattggcaagaagctggtgaactcgcggga 1164 Query: 301 cgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 347 ||| || |||||||| |||||||||||||||||||| |||||||||| Sbjct: 1165 cggaccagtgacctttgagcagccaaagatgacagtggagaagctgc 1211
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 329 bits (166), Expect = 3e-87 Identities = 300/340 (88%), Gaps = 5/340 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||||||||| ||||| || || |||||||| |||||||||| Sbjct: 884 tcgtcaccggcaacgacttctcgacgctgtacgcgcccctcatccgtgacggtcgtatgg 943 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || |||| ||||||| |||||||||||||||||| Sbjct: 944 agaagttctactgggcgcccacccgcgaggacc-gtatcggcgtctgcaagggtatcttc 1002 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 ||||||||||| ||||| ||||| |||||||||||||||||||||| | ||||||||| Sbjct: 1003 cagaccgacaacgtcagcgacgagtctgtcgtcaagatcgtcgaca-cnttcccagga-c 1060 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 | ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct: 1061 agtccatcgacttcttcggtgctctgcgtgctcgggtgta-cgacgttgaggtgcgcaag 1119 Query: 244 tgggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcgggacgg 303 ||||| || | ||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 1120 tgggtgtcgtcca-ccggaattgagaacatcggcaagaggctggtgaactcgcgggacgg 1178 Query: 304 gcccgtgaccttcgagcagccaaagatgacagtcgagaag 343 ||||| |||||||||||||| |||||||| || |||||| Sbjct: 1179 acccgtcaccttcgagcagcccaagatgacggtggagaag 1218
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 309 bits (156), Expect = 3e-81 Identities = 176/181 (97%), Gaps = 2/181 (1%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6692 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 6751 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 6752 tggagaagttctactgggctcccacccgtgacga-ccgtatcggtgtctgcaagggtatc 6810 Query: 121 ttccagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccagg 180 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct: 6811 ttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgaca-ccttcccagg 6869 Query: 181 a 181 | Sbjct: 6870 a 6870 Score = 272 bits (137), Expect = 7e-70 Identities = 153/156 (98%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 192 gactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtgggtcgg 251 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtac-gacgatgaggtgcgcaagtgggtcgg 7079 Query: 252 ctctacccggaatcgagaacattggcaagangctggtgaactcgcgggacgggcccgtga 311 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 7080 ctctacc-ggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtga 7138 Query: 312 ccttcgagcagccaaagatgacagtcgagaagctgc 347 |||||||||||||||||||||||||||||||||||| Sbjct: 7139 ccttcgagcagccaaagatgacagtcgagaagctgc 7174 Score = 105 bits (53), Expect = 9e-20 Identities = 112/131 (85%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||||||||| |||||||| ||||||||||| || || |||| Sbjct: 3568 tcgtcaccggcaacgacttctcgacgctgtacgctcccctgatccgtgacgggcgcatgg 3627 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| || |||||||| |||||| Sbjct: 3628 agaagttctactgggcgcccacccgcgagga-ccgcatcggcgtgtgcaagggcatcttc 3686 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 3687 cgcaccgacaa 3697 Score = 61.9 bits (31), Expect = 1e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 186 tccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtg 245 ||||| ||||| ||||| || ||||| || ||||||||| ||||| |||||||||||||| Sbjct: 3747 tccatcgacttcttcggcgcgctgcgggcacgggtgtac-gacgacgaggtgcgcaagtg 3805 Query: 246 ggtcggc 252 ||||||| Sbjct: 3806 ggtcggc 3812
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 299 bits (151), Expect = 3e-78 Identities = 295/338 (87%), Gaps = 5/338 (1%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 |||||||| ||||| || |||||||| ||||| || || || | ||| |||||||||||| Sbjct: 896 gtcaccggcaacgacttttcgacgctgtacgccccccttattcctgacggtcgtatggag 955 Query: 66 angttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttcca 125 | ||| |||||||| |||| ||| || |||| ||||||| |||||||||||||||||||| Sbjct: 956 aagttttactgggcgcccacccgcgaggacc-gtatcggcgtctgcaagggtatcttcca 1014 Query: 126 gaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggannaa 185 ||||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||| | Sbjct: 1015 gaccgacaacgtcagcgacgagtctgtcgtcaagatcgtcgaca-ccttcccagga-cag 1072 Query: 186 tccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtg 245 ||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct: 1073 tccatcgacttcttcggtgctctgcgtgctcgggtgta-cgacgacgaggtgcgcaagtg 1131 Query: 246 ggtcggctctacccggaatcgagaacattggcaagangctggtgaactcgcgggacgggc 305 ||| || | ||||||| |||||||| ||||||| ||||||||||||||||||||| | Sbjct: 1132 ggtgtcgtcca-ccggaattgagaacatcggcaagaggctggtgaactcgcgggacggac 1190 Query: 306 ccgtgaccttcgagcagccaaagatgacagtcgagaag 343 |||| |||||||||||||| |||||||| || |||||| Sbjct: 1191 ccgtcaccttcgagcagcccaagatgacggtggagaag 1228
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 200 bits (101), Expect = 2e-48 Identities = 144/156 (92%), Gaps = 2/156 (1%) Strand = Plus / Plus Query: 192 gactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtgggtcgg 251 ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 2 gactttttcggtgctctgcgtgctcgggtgtac-gacgacgaggtgcgcaagtgggtgac 60 Query: 252 ctctacccggaatcgagaacattggcaagangctggtgaactcgcgggacgggcccgtga 311 ||||||| || ||||||||||||||||||| ||| ||||||||||||||||| || |||| Sbjct: 61 ctctacc-ggtatcgagaacattggcaagaagcttgtgaactcgcgggacggaccagtga 119 Query: 312 ccttcgagcagccaaagatgacagtcgagaagctgc 347 |||| ||||||||||||||||||||||||||||||| Sbjct: 120 cctttgagcagccaaagatgacagtcgagaagctgc 155
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 846 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 905 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 906 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 964 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 965 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1022 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1023 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1081 Query: 244 tgggt 248 ||||| Sbjct: 1082 tgggt 1086 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1103 gagaacattggcaagaggctggtgaactcgaggga 1137
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 841 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 900 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 901 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 959 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 960 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1017 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1018 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1076 Query: 244 tgggt 248 ||||| Sbjct: 1077 tgggt 1081 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1098 gagaacattggcaagaggctggtgaactcgaggga 1132
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 95 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 154 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 155 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 213 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 214 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 271 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 272 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 330 Query: 244 tgggt 248 ||||| Sbjct: 331 tgggt 335 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 352 gagaacattggcaagaggctggtgaactcgaggga 386
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 889 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 948 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 949 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 1007 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 1008 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1065 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1066 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1124 Query: 244 tgggt 248 ||||| Sbjct: 1125 tgggt 1129 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1146 gagaacattggcaagaggctggtgaactcgaggga 1180
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 840 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 899 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 900 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 958 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 959 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1016 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1017 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1075 Query: 244 tgggt 248 ||||| Sbjct: 1076 tgggt 1080 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1097 gagaacattggcaagaggctggtgaactcgaggga 1131
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 878 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 937 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 938 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 996 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 997 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1054 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1055 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1113 Query: 244 tgggt 248 ||||| Sbjct: 1114 tgggt 1118 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1135 gagaacattggcaagaggctggtgaactcgaggga 1169
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 877 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 936 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 937 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 995 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 996 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1053 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1054 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1112 Query: 244 tgggt 248 ||||| Sbjct: 1113 tgggt 1117 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1134 gagaacattggcaagaggctggtgaactcgaggga 1168
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 661 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 720 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 721 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 779 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 780 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 837 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 838 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 896 Query: 244 tgggt 248 ||||| Sbjct: 897 tgggt 901 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 918 gagaacattggcaagaggctggtgaactcgaggga 952
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 882 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 941 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 942 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 1000 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 1001 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1058 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1059 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1117 Query: 244 tgggt 248 ||||| Sbjct: 1118 tgggt 1122 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1139 gagaacattggcaagaggctggtgaactcgaggga 1173
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 139 bits (70), Expect = 7e-30 Identities = 204/245 (83%), Gaps = 4/245 (1%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 876 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 935 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 936 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 994 Query: 124 cagaccgacaatgtcagtgacgantctgtcgtcaagatcgtcgacacccttcccaggann 183 | |||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 995 cgcaccgacaacgtccccgacgaggacatcgtcaagatcgtcgaca-gcttcccagg-cc 1052 Query: 184 aatccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaag 243 ||||||| || || ||||| ||||| ||||| || || || |||||| |||||||||||| Sbjct: 1053 aatccatcgatttcttcggcgctcttcgtgcccgtgttta-cgacgacgaggtgcgcaag 1111 Query: 244 tgggt 248 ||||| Sbjct: 1112 tgggt 1116 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Plus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 1133 gagaacattggcaagaggctggtgaactcgaggga 1167
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1024 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 1083 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 1084 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1134
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1024 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 1083 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 1084 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1134
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1053 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 1112 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 1113 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1163
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 935 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 994 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 995 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1045
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 850 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 909 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 910 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 960
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Minus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 14264 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 14205 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 14204 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 14154
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 938 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 997 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 998 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1048
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 927 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 986 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 987 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1037
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 935 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 994 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 995 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1045
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 938 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 997 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 998 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1048
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 1053 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 1112 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 1113 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 1163
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 131 bits (66), Expect = 2e-27 Identities = 101/112 (90%), Gaps = 1/112 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||||||||| ||||||||||| |||||||||| |||| Sbjct: 3019 ggtaacgatttctccaccctatacgctcctctcatccgtgatggacgtatggagaagttc 3078 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 |||||||| || | |||||| || |||||||||||||||||||||||||||| Sbjct: 3079 tactgggccccgacccgtgaaga-ccgtatcggtgtctgcaagggtatcttc 3129
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 108871 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 108812 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 108811 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 108753 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 108752 cgcaccgacaa 108742 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 108522 gagaacattggcaagaggctggtgaactcgaggga 108488 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cgacgatgaggtgcgcaagtgggt 248 |||||| ||||||||||||||||| Sbjct: 108562 cgacgacgaggtgcgcaagtgggt 108539
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 30748 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 30689 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 30688 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 30630 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 30629 cgcaccgacaa 30619 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 30399 gagaacattggcaagaggctggtgaactcgaggga 30365 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cgacgatgaggtgcgcaagtgggt 248 |||||| ||||||||||||||||| Sbjct: 30439 cgacgacgaggtgcgcaagtgggt 30416
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 28304010 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 28303951 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 28303950 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 28303892 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 28303891 cgcaccgacaa 28303881 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 28303661 gagaacattggcaagaggctggtgaactcgaggga 28303627 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cgacgatgaggtgcgcaagtgggt 248 |||||| ||||||||||||||||| Sbjct: 28303701 cgacgacgaggtgcgcaagtgggt 28303678
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 2e-24 Identities = 114/131 (87%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || ||||||| Sbjct: 28286459 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgtatgg 28286400 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||| Sbjct: 28286399 agaagttctactgggctcccacccgcgacga-ccgtgtcggcgtctgcaagggtatcttc 28286341 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 28286340 cgcaccgacaa 28286330 Score = 56.0 bits (28), Expect = 8e-05 Identities = 33/35 (94%) Strand = Plus / Minus Query: 266 gagaacattggcaagangctggtgaactcgcggga 300 |||||||||||||||| ||||||||||||| |||| Sbjct: 28286110 gagaacattggcaagaggctggtgaactcgaggga 28286076 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cgacgatgaggtgcgcaagtgggt 248 |||||| ||||||||||||||||| Sbjct: 28286150 cgacgacgaggtgcgcaagtgggt 28286127
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 111 bits (56), Expect = 2e-21 Identities = 115/134 (85%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| |||||||| ||||| || | |||||||| || ||||||||||||||||||| Sbjct: 966 tcgtcactggtaacgacttctccaccttgtacgctccccttatccgtgatggtcgtatgg 1025 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| ||||||||||||||||| |||||| || |||||||||||| || ||||||||| Sbjct: 1026 agaagttctactgggctcccacccgtgagga-ccgtatcggtgttgccaccggtatcttc 1084 Query: 124 cagaccgacaatgt 137 |||||||||||| Sbjct: 1085 aggaccgacaatgt 1098
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 9e-20 Identities = 88/99 (88%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || | |||||||| || |||||||||||||||||||||| |||| Sbjct: 2716 ggtaacgatttctccaccttgtacgctccccttatccgtgatggtcgtatggagaagttc 2775 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctg 110 ||||||||||||| |||||| || |||||| |||||||| Sbjct: 2776 tactgggctcccacccgtgagga-ccgtattggtgtctg 2813
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 105 bits (53), Expect = 9e-20 Identities = 75/83 (90%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 |||||||||||||||||||| || | ||||||||||| |||||||| |||||||||||| Sbjct: 929 gtcaccggtaacgatttctcaacattgtacgctcctctcatccgtgacggtcgtatggag 988 Query: 66 angttctactgggctcccanccg 88 | ||||||||||||||||| ||| Sbjct: 989 aagttctactgggctcccacccg 1011
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 105 bits (53), Expect = 9e-20 Identities = 112/131 (85%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||||||||| |||||||| ||||||||||| || || |||| Sbjct: 999 tcgtcaccggcaacgacttctcgacgctgtacgctcccctgatccgtgacgggcgcatgg 1058 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| || |||||||| |||||| Sbjct: 1059 agaagttctactgggcgcccacccgcgagga-ccgcatcggcgtgtgcaagggcatcttc 1117 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 1118 cgcaccgacaa 1128 Score = 61.9 bits (31), Expect = 1e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 186 tccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtg 245 ||||| ||||| ||||| || ||||| || ||||||||| ||||| |||||||||||||| Sbjct: 1178 tccatcgacttcttcggcgcgctgcgggcacgggtgtac-gacgacgaggtgcgcaagtg 1236 Query: 246 ggtcggc 252 ||||||| Sbjct: 1237 ggtcggc 1243
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 105 bits (53), Expect = 9e-20 Identities = 88/99 (88%), Gaps = 1/99 (1%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || | |||||||| || |||||||||||||||||||||| |||| Sbjct: 1088 ggtaacgatttctccaccttgtacgctccccttatccgtgatggtcgtatggagaagttc 1147 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctg 110 ||||||||||||| |||||| || |||||| |||||||| Sbjct: 1148 tactgggctcccacccgtgagga-ccgtattggtgtctg 1185
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 99.6 bits (50), Expect = 6e-18 Identities = 112/132 (84%), Gaps = 1/132 (0%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||| |||||||| | ||||||||||| |||||||||||||||||||| Sbjct: 913 gtcactggtaacgacttctcgacattgtacgctcctcttatccgtgatggtcgtatggaa 972 Query: 66 angttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttcca 125 | |||||||||||||| | | | || || |||||| ||||||||||||||||| ||| Sbjct: 973 aaattctactgggctcctaccagggaaga-ccgtattggtgtctgcaagggtattttcag 1031 Query: 126 gaccgacaatgt 137 ||| |||||||| Sbjct: 1032 gactgacaatgt 1043
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 99.6 bits (50), Expect = 6e-18 Identities = 70/77 (90%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||||||||| |||||||| || || || |||||||| ||||||||||||||||||||| Sbjct: 351 gtcaccggtaatgatttctcaacactttatgctcctctcatccgtgatggtcgtatggag 410 Query: 66 angttctactgggctcc 82 | ||||||||||||||| Sbjct: 411 aagttctactgggctcc 427
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 95.6 bits (48), Expect = 9e-17 Identities = 71/79 (89%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 |||||||||||||||||||||||||| ||||| || || |||||||| |||||||||||| Sbjct: 913 gtcaccggtaacgatttctcgacgctgtacgcgccgctcatccgtgacggtcgtatggag 972 Query: 66 angttctactgggctccca 84 | ||| |||||||| |||| Sbjct: 973 aagttttactgggcaccca 991 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 184 aatccattgactttttcggtgctctg 209 |||||||||||||||||||||||||| Sbjct: 1088 aatccattgactttttcggtgctctg 1113
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 93.7 bits (47), Expect = 4e-16 Identities = 67/74 (90%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||||||||| || || || |||||||| ||||||||||||||||||||| Sbjct: 918 gtcactggtaacgatttctcaacactttatgctcctctcatccgtgatggtcgtatggag 977 Query: 66 angttctactgggc 79 | |||||||||||| Sbjct: 978 aagttctactgggc 991
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 91.7 bits (46), Expect = 1e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| || |||||||| || || |||||||| |||||||||| Sbjct: 836 tcgtcaccggcaacgacttctccaccctctacgcccccctcatccgtgacggtcgtatgg 895 Query: 64 agangttctactgggctccca 84 ||| ||||||||||||||||| Sbjct: 896 agaagttctactgggctccca 916 Score = 42.1 bits (21), Expect = 1.2 Identities = 47/56 (83%) Strand = Plus / Plus Query: 278 aagangctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgac 333 |||| |||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 1105 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgac 1160
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 91.7 bits (46), Expect = 1e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| || |||||||| || || |||||||| |||||||||| Sbjct: 699 tcgtcaccggcaacgacttctccaccctctacgcccccctcatccgtgacggtcgtatgg 758 Query: 64 agangttctactgggctccca 84 ||| ||||||||||||||||| Sbjct: 759 agaagttctactgggctccca 779 Score = 42.1 bits (21), Expect = 1.2 Identities = 47/56 (83%) Strand = Plus / Plus Query: 278 aagangctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgac 333 |||| |||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 968 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgac 1023
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 91.7 bits (46), Expect = 1e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| || |||||||| || || |||||||| |||||||||| Sbjct: 535 tcgtcaccggcaacgacttctccaccctctacgcccccctcatccgtgacggtcgtatgg 594 Query: 64 agangttctactgggctccca 84 ||| ||||||||||||||||| Sbjct: 595 agaagttctactgggctccca 615 Score = 48.1 bits (24), Expect = 0.019 Identities = 50/59 (84%) Strand = Plus / Plus Query: 275 ggcaagangctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgac 333 ||||||| |||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 801 ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgac 859
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 91.7 bits (46), Expect = 1e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| || |||||||| || || |||||||| |||||||||| Sbjct: 729 tcgtcaccggcaacgacttctccaccctctacgcccccctcatccgtgacggtcgtatgg 788 Query: 64 agangttctactgggctccca 84 ||| ||||||||||||||||| Sbjct: 789 agaagttctactgggctccca 809 Score = 48.1 bits (24), Expect = 0.019 Identities = 50/59 (84%) Strand = Plus / Plus Query: 275 ggcaagangctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgac 333 ||||||| |||||||||||||| ||| ||||| ||| |||| |||||| |||||||| Sbjct: 995 ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgac 1053
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 85.7 bits (43), Expect = 9e-14 Identities = 102/121 (84%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct: 455 tcgtcaccggcaacgacttctccacgctctacgcgccgctcatccgcgacggccgcatgg 514 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| ||||||||||| |||||| Sbjct: 515 agaagttctactgggcgcccacccgcgagga-ccgcatcggcgtctgcaagggcatcttc 573 Query: 124 c 124 | Sbjct: 574 c 574
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 85.7 bits (43), Expect = 9e-14 Identities = 102/121 (84%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct: 850 tcgtcaccggcaacgacttctccacgctctacgcgccgctcatccgcgacggccgcatgg 909 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| ||||||||||| |||||| Sbjct: 910 agaagttctactgggcgcccacccgcgagga-ccgcatcggcgtctgcaagggcatcttc 968 Query: 124 c 124 | Sbjct: 969 c 969
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 85.7 bits (43), Expect = 9e-14 Identities = 66/74 (89%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||||||||| |||||||| ||||| || |||||||| || |||||||| ||||||||| Sbjct: 922 gtcaccggtaatgatttctcaacgctgtatgctcctctcattcgtgatgggcgtatggag 981 Query: 66 angttctactgggc 79 | |||||||||||| Sbjct: 982 aagttctactgggc 995
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 85.7 bits (43), Expect = 9e-14 Identities = 102/121 (84%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||||||||| || || ||||| || || || |||| Sbjct: 850 tcgtcaccggcaacgacttctccacgctctacgcgccgctcatccgcgacggccgcatgg 909 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| ||||||||||| |||||| Sbjct: 910 agaagttctactgggcgcccacccgcgagga-ccgcatcggcgtctgcaagggcatcttc 968 Query: 124 c 124 | Sbjct: 969 c 969
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 81.8 bits (41), Expect = 1e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| |||||||||||||| || | || ||||| || ||||||||||||||||||| Sbjct: 147 tcgtcactggtaacgatttctccacattgtatgctccacttatccgtgatggtcgtatgg 206 Query: 64 agangttctactgggc 79 ||| |||||||||||| Sbjct: 207 agaagttctactgggc 222
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 81.8 bits (41), Expect = 1e-12 Identities = 109/131 (83%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||||||||| ||||| || || ||||| || || || |||| Sbjct: 849 tcgtcaccggcaacgacttctcgacgctgtacgcgcccctcatccgggacggccgcatgg 908 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| |||||||||||| |||| ||| || || ||| ||||| || |||||||| |||||| Sbjct: 909 agaagttctactgggcgcccacccgggagga-ccgcatcggcgtgtgcaagggcatcttc 967 Query: 124 cagaccgacaa 134 | |||||||| Sbjct: 968 cgcaccgacaa 978 Score = 61.9 bits (31), Expect = 1e-06 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand = Plus / Plus Query: 186 tccattgactttttcggtgctctgcgtgctcgggtgtaccgacgatgaggtgcgcaagtg 245 ||||| ||||| ||||| || ||||| || ||||||||| ||||| |||||||||||||| Sbjct: 1028 tccatcgacttcttcggcgcgctgcgggcgcgggtgtac-gacgacgaggtgcgcaagtg 1086 Query: 246 ggtcggc 252 ||||||| Sbjct: 1087 ggtcggc 1093
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 81.8 bits (41), Expect = 1e-12 Identities = 88/103 (85%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 36 gctcctctgatccgtgatggtcgtatggagangttctactgggctcccanccgtgacgac 95 |||||||| |||||||||||||||||||||| ||||||||||| |||| ||||| || Sbjct: 147 gctcctctcatccgtgatggtcgtatggagaaattctactgggcacccactcgtgagga- 205 Query: 96 ccgtatcggtgtctgcaagggtatcttccagaccgacaatgtc 138 |||||| ||||| |||| ||||||||| ||| ||||||||| Sbjct: 206 ccgtattggtgtttgcactggtatcttcaggactgacaatgtc 248
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 81.8 bits (41), Expect = 1e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| |||||||||||||| || | || ||||| || ||||||||||||||||||| Sbjct: 907 tcgtcactggtaacgatttctccacattgtatgctccacttatccgtgatggtcgtatgg 966 Query: 64 agangttctactgggc 79 ||| |||||||||||| Sbjct: 967 agaagttctactgggc 982
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 410 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 469 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 470 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 528 Query: 124 c 124 | Sbjct: 529 c 529
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 416 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 475 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 476 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 534 Query: 124 c 124 | Sbjct: 535 c 535
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 77.8 bits (39), Expect = 2e-11 Identities = 101/121 (83%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || |||||||| || || |||| Sbjct: 414 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgtgacgggcgcatgg 473 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 474 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 532 Query: 124 c 124 | Sbjct: 533 c 533
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 77.8 bits (39), Expect = 2e-11 Identities = 107/129 (82%), Gaps = 1/129 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| |||||||||||||| || || || |||||||| |||||||| |||||||||| Sbjct: 726 tcgtcactggtaacgatttctccacactgtatgctcctctcatccgtgacggtcgtatgg 785 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 ||| || |||||||| || | | ||||| |||||||||||| ||||| ||||| ||| Sbjct: 786 agaaattttactgggcaccaactagggacga-ccgtatcggtgtttgcaaaggtattttc 844 Query: 124 cagaccgac 132 ||||||| Sbjct: 845 aggaccgac 853
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 77.8 bits (39), Expect = 2e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||| ||||| || | || |||||||| ||||||||||||||||||||| Sbjct: 890 gtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggag 949 Query: 66 angttctactgggc 79 | |||||||||||| Sbjct: 950 aagttctactgggc 963
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 75.8 bits (38), Expect = 8e-11 Identities = 70/81 (86%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| ||||| || |||||||| | ||||||||||| || |||||||||||||||| Sbjct: 754 tcgtcacaggtaatgacttctcgacattgtacgctcctctcattcgtgatggtcgtatgg 813 Query: 64 agangttctactgggctccca 84 ||| ||||||||||| |||| Sbjct: 814 agaaattctactgggcgccca 834
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 75.8 bits (38), Expect = 8e-11 Identities = 70/81 (86%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| ||||| || |||||||| | ||||||||||| || |||||||||||||||| Sbjct: 927 tcgtcacaggtaatgacttctcgacattgtacgctcctctcattcgtgatggtcgtatgg 986 Query: 64 agangttctactgggctccca 84 ||| ||||||||||| |||| Sbjct: 987 agaaattctactgggcgccca 1007
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 73.8 bits (37), Expect = 3e-10 Identities = 66/76 (86%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| |||||||||||||| || || || |||||||| |||||||| |||||||||| Sbjct: 725 tcgtcactggtaacgatttctccacactgtatgctcctctcatccgtgacggtcgtatgg 784 Query: 64 agangttctactgggc 79 ||| || |||||||| Sbjct: 785 agaaattttactgggc 800
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 73.8 bits (37), Expect = 3e-10 Identities = 90/107 (84%), Gaps = 1/107 (0%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||||||||| |||||||| || | || ||||| || ||||||||||||||||||||| Sbjct: 38 gtcaccggtaatgatttctccaccttgtatgctccccttatccgtgatggtcgtatggag 97 Query: 66 angttctactgggctcccanccgtgacgacccgtatcggtgtctgca 112 | ||||||||||| || | ||| ||||| ||||| |||||||||| Sbjct: 98 aaattctactgggcaccaacccgcgacga-tcgtattggtgtctgca 143
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 69.9 bits (35), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||||||||| || | || || ||||| ||||||||||||||||||||| Sbjct: 926 gtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggag 985 Query: 66 angttctactgggc 79 | ||||||||||| Sbjct: 986 aaattctactgggc 999
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 414 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 473 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 474 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 532 Query: 124 c 124 | Sbjct: 533 c 533
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 410 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 469 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 470 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 528 Query: 124 c 124 | Sbjct: 529 c 529
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 410 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 469 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 470 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 528 Query: 124 c 124 | Sbjct: 529 c 529
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 412 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 471 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 472 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 530 Query: 124 c 124 | Sbjct: 531 c 531
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 69.9 bits (35), Expect = 5e-09 Identities = 100/121 (82%), Gaps = 1/121 (0%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 |||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || |||| Sbjct: 416 tcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgcatgg 475 Query: 64 agangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttc 123 | | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| |||||| Sbjct: 476 acaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatcttc 534 Query: 124 c 124 | Sbjct: 535 c 535
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 69.9 bits (35), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||| ||||| || | || |||||||| ||||||||||||||||||||| Sbjct: 235 gtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggag 294 Query: 66 angttctactgggc 79 | |||||| ||||| Sbjct: 295 aagttctattgggc 308
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 69.9 bits (35), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||| ||||| || | || |||||||| ||||||||||||||||||||| Sbjct: 879 gtcactggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggag 938 Query: 66 angttctactgggc 79 | |||||| ||||| Sbjct: 939 aagttctattgggc 952
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 67.9 bits (34), Expect = 2e-08 Identities = 102/124 (82%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 ||||||||||||| ||||| ||||| ||||| ||||| || || || || || || || | Sbjct: 393 tcgtcgtcaccggcaacgacttctccacgctgtacgcgccgctcattcgcgacgggcgca 452 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||| | |||||||||||| |||| ||| ||||| ||| ||||| || |||||||| ||| Sbjct: 453 tggacaagttctactgggcgcccacccgcgacga-ccgcatcggcgtgtgcaagggcatc 511 Query: 121 ttcc 124 |||| Sbjct: 512 ttcc 515
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 67.9 bits (34), Expect = 2e-08 Identities = 102/124 (82%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 1 tcgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgta 60 ||||||||||||| ||||| ||||| ||||| ||||| || || ||||| || || || | Sbjct: 401 tcgtcgtcaccggcaacgacttctccacgctgtacgcgccgctcatccgcgacgggcgca 460 Query: 61 tggagangttctactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatc 120 |||| | |||||||||||| |||| ||| || || ||| ||||| || |||||||| ||| Sbjct: 461 tggacaagttctactgggcgcccacccgggagga-ccgcatcggcgtgtgcaagggcatc 519 Query: 121 ttcc 124 |||| Sbjct: 520 ttcc 523
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 63.9 bits (32), Expect = 3e-07 Identities = 67/79 (84%) Strand = Plus / Plus Query: 4 tcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatgg 63 ||||||| || ||||||||||| | || || ||||| || ||||| ||||||||||||| Sbjct: 341 tcgtcacaggaaacgatttctcagcactatatgctccccttatccgcgatggtcgtatgg 400 Query: 64 agangttctactgggctcc 82 | | ||||||||||||||| Sbjct: 401 aaaagttctactgggctcc 419
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 60.0 bits (30), Expect = 5e-06 Identities = 89/108 (82%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| |||||||| ||||| || | || || ||||| ||||||||||| ||||||||| Sbjct: 913 gtcactggtaacgacttctcaacattgtatgcccctcttatccgtgatggccgtatggag 972 Query: 66 angttctactgggctcccanccgtgacgacccgtatcggtgtctgcaa 113 | ||||||||||| |||| | | || || |||||| ||||||||||| Sbjct: 973 aaattctactgggcacccaccagggagga-ccgtattggtgtctgcaa 1019
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 58.0 bits (29), Expect = 2e-05 Identities = 94/115 (81%), Gaps = 1/115 (0%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || || ||||| || || |||||||| || || ||||||| || | Sbjct: 1748 ggtaacgatttctccaccctgtacgcccccctcatccgtgacggccgcatggagaagtac 1807 Query: 72 tactgggctcccanccgtgacgacccgtatcggtgtctgcaagggtatcttccag 126 |||||| |||| |||||| || ||| ||||| ||||||| ||| ||||||||| Sbjct: 1808 tactggaaccccacccgtgagga-ccgcatcggcgtctgcatgggaatcttccag 1861
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 52.0 bits (26), Expect = 0.001 Identities = 52/61 (85%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||||||||| || | |||| |||||| |||| |||||| |||||||||| |||| Sbjct: 919 ggtaacgatttctccaccttatacggtcctctcatccttgatggacgtatggagaagttc 978 Query: 72 t 72 | Sbjct: 979 t 979
>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete cds Length = 1437 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 899 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 958 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 959 aagttctactgg 970
>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1299 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 865 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 924 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 925 aagttctactgg 936
>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1437 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 899 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 958 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 959 aagttctactgg 970
>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 873 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 932 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 933 aagttctactgg 944
>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete cds, clone: RAFL21-28-D21 Length = 1447 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Plus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 886 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 945 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 946 aagttctactgg 957
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 50.1 bits (25), Expect = 0.005 Identities = 60/72 (83%) Strand = Plus / Minus Query: 6 gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 65 ||||| || ||||||||||| || || || ||||| ||||||||||| || | |||||| Sbjct: 97686 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 97627 Query: 66 angttctactgg 77 | |||||||||| Sbjct: 97626 aagttctactgg 97615
>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 48.1 bits (24), Expect = 0.019 Identities = 53/63 (84%) Strand = Plus / Plus Query: 15 aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttctac 74 ||||||||||| || || || ||||| ||||||||||| || | ||||||| ||||||| Sbjct: 936 aacgatttctctacactgtatgctccactgatccgtgaaggaagaatggagaagttctac 995 Query: 75 tgg 77 ||| Sbjct: 996 tgg 998
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 48.1 bits (24), Expect = 0.019 Identities = 59/71 (83%) Strand = Plus / Plus Query: 12 ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagangttc 71 |||||||| ||||| ||| | || || ||||| || ||||||||||| ||||| | ||| Sbjct: 930 ggtaacgacttctcaacgttatatgcacctctcattcgtgatggtcggatggataaattc 989 Query: 72 tactgggctcc 82 ||||||||||| Sbjct: 990 tactgggctcc 1000
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 42.1 bits (21), Expect = 1.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 36 gctcctctgatccgtgatggtcgtatggagangttctactgggc 79 |||||||| || ||||| ||||||||||||| ||||| ||||| Sbjct: 103868 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 103825
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 42.1 bits (21), Expect = 1.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 36 gctcctctgatccgtgatggtcgtatggagangttctactgggc 79 |||||||| || ||||| ||||||||||||| ||||| ||||| Sbjct: 82893 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 82850
>emb|CR861443.1| Pongo pygmaeus mRNA; cDNA DKFZp459F122 (from clone DKFZp459F122) Length = 2493 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaac 271 |||||||||||||||||| |||||| Sbjct: 277 gtcggctctacccggaatggagaac 301
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ggtgtctgcaagggtatcttccag 126 |||||||||||||||||| ||||| Sbjct: 67265 ggtgtctgcaagggtatcatccag 67288
>ref|NM_016577.3| Homo sapiens RAB6B, member RAS oncogene family (RAB6B), mRNA Length = 5561 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 894 gtcggctctacccggaatggagaa 917
>gb|BT007263.1| Homo sapiens RAB6B, member RAS oncogene family mRNA, complete cds Length = 627 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 513 gtcggctctacccggaatggagaa 536
>gb|AC080128.21| Homo sapiens 3 BAC RP11-404G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181241 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 104414 gtcggctctacccggaatggagaa 104437
>gb|AF498940.1| Homo sapiens small GTP binding protein RAB6B (RAB6B) mRNA, complete cds Length = 627 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 513 gtcggctctacccggaatggagaa 536
>dbj|AB073348.1| Homo sapiens primary neuroblastoma cDNA, clone:Nbla00086, full insert sequence Length = 3332 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 13 gtcggctctacccggaatggagaa 36
>gb|AF166492.1|AF166492 Homo sapiens small GTPase RAB6B (RAB6B) mRNA, complete cds Length = 1266 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 850 gtcggctctacccggaatggagaa 873
>gb|AY889294.1| Synthetic construct Homo sapiens clone FLH110329.01X RAB6B (RAB6B) mRNA, complete cds Length = 627 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 513 gtcggctctacccggaatggagaa 536
>gb|BC002510.2| Homo sapiens RAB6B, member RAS oncogene family, mRNA (cDNA clone MGC:829 IMAGE:3050592), complete cds Length = 1261 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 863 gtcggctctacccggaatggagaa 886
>gb|BC078662.1| Homo sapiens RAB6B, member RAS oncogene family, mRNA (cDNA clone MGC:88263 IMAGE:6450986), complete cds Length = 5395 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 gtcggctctacccggaatcgagaa 270 |||||||||||||||||| ||||| Sbjct: 642 gtcggctctacccggaatggagaa 665 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,191,461 Number of Sequences: 3902068 Number of extensions: 1191461 Number of successful extensions: 16780 Number of sequences better than 10.0: 105 Number of HSP's better than 10.0 without gapping: 105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16506 Number of HSP's gapped (non-prelim): 204 length of query: 347 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 325 effective length of database: 17,147,199,772 effective search space: 5572839925900 effective search space used: 5572839925900 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
