ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak0a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 216 3e-53
2gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 216 3e-53
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 216 3e-53
4dbj|AK111624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
5dbj|AK111530.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
6dbj|AK106141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
7dbj|AK098942.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
8dbj|AK060922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 3e-53
9gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 216 3e-53
10gb|AY110093.1| Zea mays CL15341_1 mRNA sequence 107 2e-20
11gb|AY278988.1| Zea mays PPR2 (ppr2) gene, complete cds; nuclear ... 96 9e-17
12emb|AJ130879.2|CST130879 Clostridium sticklandii ORFX' (partial)... 42 1.1
13gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, com... 40 4.5
14emb|CR391167.1| Gallus gallus finished cDNA, clone ChEST203d22 40 4.5
15gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 4.5
16dbj|AB196513.1| Paralichthys olivaceus COL1A1 mRNA for type 1 co... 40 4.5
17emb|AJ238634.1|CPR238634 Chlorella protothecoides mRNA for putat... 40 4.5

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                            
Query: 36       tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
                ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 11022836 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 11022895

                                                                            
Query: 96       ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
                || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 11022896 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 11022955

                                                                            
Query: 156      gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
                ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 11022956 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 11023015

                                                                            
Query: 216      aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
                ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 11023016 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 11023075

                                                                            
Query: 276      attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
                |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 11023076 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 11023135

                     
Query: 336      aaatt 340
                |||||
Sbjct: 11023136 aaatt 11023140



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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Minus

                                                                          
Query: 36     tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
              ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 110286 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 110227

                                                                          
Query: 96     ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
              || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 110226 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 110167

                                                                          
Query: 156    gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
              ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 110166 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 110107

                                                                          
Query: 216    aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
              ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 110106 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 110047

                                                                          
Query: 276    attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
              |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 110046 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 109987

                   
Query: 336    aaatt 340
              |||||
Sbjct: 109986 aaatt 109982



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                            
Query: 36       tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
                ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 11019599 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 11019658

                                                                            
Query: 96       ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
                || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 11019659 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 11019718

                                                                            
Query: 156      gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
                ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 11019719 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 11019778

                                                                            
Query: 216      aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
                ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 11019779 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 11019838

                                                                            
Query: 276      attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
                |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 11019839 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 11019898

                     
Query: 336      aaatt 340
                |||||
Sbjct: 11019899 aaatt 11019903



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>dbj|AK111624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108I11, full
           insert sequence
          Length = 3398

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 675 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 734

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 735 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 794

                                                                       
Query: 156 gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
           ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 795 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 854

                                                                       
Query: 216 aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
           ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 855 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 914

                                                                       
Query: 276 attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
           |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 915 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 974

                
Query: 336 aaatt 340
           |||||
Sbjct: 975 aaatt 979



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>dbj|AK111530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024C10, full
           insert sequence
          Length = 2335

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 671 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 730

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 731 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 790

                                                                       
Query: 156 gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
           ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 791 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 850

                                                                       
Query: 216 aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
           ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 851 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 910

                                                                       
Query: 276 attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
           |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 911 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 970

                
Query: 336 aaatt 340
           |||||
Sbjct: 971 aaatt 975



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>dbj|AK106141.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G09, full
           insert sequence
          Length = 1786

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 694 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 753

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 754 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 813

                                                                       
Query: 156 gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
           ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 814 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 873

                                                                       
Query: 216 aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
           ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 874 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 933

                                                                       
Query: 276 attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
           |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 934 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 993

                
Query: 336 aaatt 340
           |||||
Sbjct: 994 aaatt 998



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>dbj|AK098942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D15, full
           insert sequence
          Length = 1730

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 674 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 733

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 734 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 793

                                                                       
Query: 156 gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
           ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 794 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 853

                                                                       
Query: 216 aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
           ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 854 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 913

                                                                       
Query: 276 attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
           |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 914 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 973

                
Query: 336 aaatt 340
           |||||
Sbjct: 974 aaatt 978



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>dbj|AK060922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-H05, full
           insert sequence
          Length = 1786

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 694 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 753

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 754 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 813

                                                                       
Query: 156 gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
           ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 814 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 873

                                                                       
Query: 216 aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
           ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 874 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 933

                                                                       
Query: 276 attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
           |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 934 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 993

                
Query: 336 aaatt 340
           |||||
Sbjct: 994 aaatt 998



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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score =  216 bits (109), Expect = 3e-53
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                         
Query: 36    tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
             ||||||||||| ||||| ||||| ||||   |||||||||| |  || || ||| |||| 
Sbjct: 66321 tgccagcctgacgtctatacctacagcaccatcatcaaggcttgtgttgatgcctcaaga 66380

                                                                         
Query: 96    ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
             || ||| | |||||||||||||||||||| |||||||| |||||| | ||||| ||||||
Sbjct: 66381 tttgacatagtcgatgctatgtacaaagatatggctgaccgctccatagcgcccaacacg 66440

                                                                         
Query: 156   gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
             ||||||||||||||||| |||||||||||  ||||||| |||||||||||||| ||||||
Sbjct: 66441 gtcacgcagaacattgtcctcagtggctatggcagggctggaaggttggatgacatggag 66500

                                                                         
Query: 216   aagctactctcggcgatgctcgaaagtgcaaatagtaaaccagatgtctggaccatgaac 275
             ||  ||||||| || |||||||| ||  ||| ||| ||||||||||| ||||| ||||||
Sbjct: 66501 aaagtactctctgcaatgctcgacagcacaactagcaaaccagatgtatggactatgaac 66560

                                                                         
Query: 276   attatcctaagcttgtttgggaacagtggccaggttgagctgatggagaagtggtatgag 335
             |||||  ||||| | ||||| ||||| || ||| ||||    ||||||||||||||||||
Sbjct: 66561 attatattaagcctatttggtaacaggggtcagattgaatctatggagaagtggtatgag 66620

                  
Query: 336   aaatt 340
             |||||
Sbjct: 66621 aaatt 66625



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>gb|AY110093.1| Zea mays CL15341_1 mRNA sequence
          Length = 850

 Score =  107 bits (54), Expect = 2e-20
 Identities = 126/150 (84%)
 Strand = Plus / Minus

                                                                       
Query: 36  tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
           ||||||||||||||||||||||| ||||   |||||||||||| ||| |||||  | |||
Sbjct: 840 tgccagcctgatgtctacacctacagcaccatcatcaaggcctgcgttgacgctgccagg 781

                                                                       
Query: 96  ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
           |||||||||  |||  | ||||||||||| ||||| ||||||||| |  | || ||||||
Sbjct: 780 ttcgacctcaccgacaccatgtacaaagacatggcggagcgctccatatcacccaacacg 721

                                         
Query: 156 gtcacgcagaacattgttctcagtggctac 185
           |||||||||||||| || ||||| ||||||
Sbjct: 720 gtcacgcagaacatcgtcctcagcggctac 691



 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 74/86 (86%)
 Strand = Plus / Minus

                                                                       
Query: 252 aaaccagatgtctggaccatgaacattatcctaagcttgtttgggaacagtggccaggtt 311
           ||||| || ||||||||||||||||| ||||| ||| | || |||||| | ||| |||||
Sbjct: 624 aaaccggacgtctggaccatgaacatcatcctcagcctcttcgggaaccggggcgaggtt 565

                                     
Query: 312 gagctgatggagaagtggtatgagaa 337
           |||||||||||||  |||||||||||
Sbjct: 564 gagctgatggagagatggtatgagaa 539



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>gb|AY278988.1| Zea mays PPR2 (ppr2) gene, complete cds; nuclear gene for chloroplast
            product
          Length = 2781

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 147/180 (81%)
 Strand = Plus / Plus

                                                                        
Query: 36   tgccagcctgatgtctacacctatagcatactcatcaaggccttcgtcgacgccccaagg 95
            ||||||||||| ||||||||||| ||||   |||||||||||| | | |||||  | |||
Sbjct: 1620 tgccagcctgacgtctacacctacagcaccatcatcaaggcctgcattgacgctgccagg 1679

                                                                        
Query: 96   ttcgacctcgtcgatgctatgtacaaagagatggctgagcgctccgtggcgccaaacacg 155
            |||||||||  ||| || ||||||||||| ||||| ||||||||| |  | || ||||||
Sbjct: 1680 ttcgacctcaccgacgccatgtacaaagacatggcggagcgctccatatcacccaacacg 1739

                                                                        
Query: 156  gtcacgcagaacattgttctcagtggctactgcagggccggaaggttggatgatatggag 215
            ||||| |||||||| || ||||| |||||| | | ||||||  ||||||| || ||||||
Sbjct: 1740 gtcacacagaacatcgtcctcagcggctacgggaaggccgggcggttggacgacatggag 1799



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 264  tggaccatgaacattatcctaagcttgtttgggaacagtggccaggttgagctgatggag 323
            |||||||||||||| ||||| ||| | || |||||| | ||| ||||||| |||||||||
Sbjct: 1848 tggaccatgaacatcatcctcagcctcttcgggaaccggggcgaggttgaactgatggag 1907

                          
Query: 324  aagtggtatgagaa 337
            |  ||||| |||||
Sbjct: 1908 agatggtacgagaa 1921



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>emb|AJ130879.2|CST130879 Clostridium sticklandii ORFX' (partial), cysKERS genes, ORFY,
            prdABCDEFRX genes and prdG' gene (partial)
          Length = 15086

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 110  tgctatgtacaaagagatggctgag 134
            |||||| ||||||||||||||||||
Sbjct: 4770 tgctatatacaaagagatggctgag 4794



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>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds
          Length = 1282

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  tcaaggccttcgtcgacgcc 89
           ||||||||||||||||||||
Sbjct: 909 tcaaggccttcgtcgacgcc 928



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>emb|CR391167.1| Gallus gallus finished cDNA, clone ChEST203d22
          Length = 853

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 285 agcttgtttgggaacagtgg 304
           ||||||||||||||||||||
Sbjct: 156 agcttgtttgggaacagtgg 175



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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     gaccatgaacattatcctaa 285
               ||||||||||||||||||||
Sbjct: 3229222 gaccatgaacattatcctaa 3229203



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>dbj|AB196513.1| Paralichthys olivaceus COL1A1 mRNA for type 1 collagen alpha 1,
            complete cds
          Length = 5117

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 152  cacggtcacgcagaacattg 171
            ||||||||||||||||||||
Sbjct: 3789 cacggtcacgcagaacattg 3770



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>emb|AJ238634.1|CPR238634 Chlorella protothecoides mRNA for putative degreening-related
           protein (dee25 gene)
          Length = 1308

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 172 ttctcagtggctactgcagggccg 195
           ||||||| ||||||||||||||||
Sbjct: 725 ttctcagcggctactgcagggccg 702


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,443,604
Number of Sequences: 3902068
Number of extensions: 2443604
Number of successful extensions: 45734
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45667
Number of HSP's gapped (non-prelim): 49
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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