Clone Name | baak0a03 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197702.1| Oryza sativa (japonica cultivar-group) putative DNA-binding protein (OSJNBa0010C11.7), mRNA Length = 576 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 147 caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 472 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 525 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 66 gacgcctactccgccttcctcgcctgccaagcgg 99 ||||||| ||||||||||||||||| |||||||| Sbjct: 421 gacgccttctccgccttcctcgcctcccaagcgg 454
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Minus Query: 147 caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 19344 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 19291 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 66 gacgcctactccgccttcctcgcctgccaagcgg 99 ||||||| ||||||||||||||||| |||||||| Sbjct: 19491 gacgccttctccgccttcctcgcctcccaagcgg 19458
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Minus Query: 147 caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 21344331 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 21344278 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 66 gacgcctactccgccttcctcgcctgccaagcgg 99 ||||||| ||||||||||||||||| |||||||| Sbjct: 21344478 gacgccttctccgccttcctcgcctcccaagcgg 21344445 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 tttacactccaaaaactgcaca 358 |||||||||||||||||||||| Sbjct: 9091236 tttacactccaaaaactgcaca 9091257
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 91.7 bits (46), Expect = 2e-15 Identities = 52/54 (96%) Strand = Plus / Minus Query: 147 caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 21355594 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 21355541 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 66 gacgcctactccgccttcctcgcctgccaagcgg 99 ||||||| ||||||||||||||||| |||||||| Sbjct: 21355741 gacgccttctccgccttcctcgcctcccaagcgg 21355708 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 337 tttacactccaaaaactgcaca 358 |||||||||||||||||||||| Sbjct: 9096375 tttacactccaaaaactgcaca 9096396
>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05, complete sequence Length = 169500 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 337 tttacactccaaaaactgcaca 358 |||||||||||||||||||||| Sbjct: 97488 tttacactccaaaaactgcaca 97467
>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome Length = 10615 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 49 acgccgccgccgtgccggacgc 70 |||||||||||||||||||||| Sbjct: 7065 acgccgccgccgtgccggacgc 7086
>ref|XM_476362.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1764 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ccctggaacgccgccgccgtg 62 ||||||||||||||||||||| Sbjct: 1338 ccctggaacgccgccgccgtg 1358
>emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on chromosome 10, complete sequence Length = 170365 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 agacccagccacgcagctcca 231 ||||||||||||||||||||| Sbjct: 105084 agacccagccacgcagctcca 105104
>gb|AY270607.1| Homo sapiens clone SKG03-G12 putative promoter sequence Length = 492 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 agacccagccacgcagctcca 231 ||||||||||||||||||||| Sbjct: 166 agacccagccacgcagctcca 146
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ccctggaacgccgccgccgtg 62 ||||||||||||||||||||| Sbjct: 163307 ccctggaacgccgccgccgtg 163327 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctttggacatgaaaaatct 299 |||||||||||||||||||| Sbjct: 13149630 cctttggacatgaaaaatct 13149611
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ccctggaacgccgccgccgtg 62 ||||||||||||||||||||| Sbjct: 162606 ccctggaacgccgccgccgtg 162626
>ref|XM_715677.1| Candida albicans SC5314 putative monocarboxylate permease (CaO19_11813), mRNA Length = 1941 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 tttgttgtattggaatcatt 381 |||||||||||||||||||| Sbjct: 701 tttgttgtattggaatcatt 720
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 atgcagccctggaacgccgc 55 |||||||||||||||||||| Sbjct: 1295010 atgcagccctggaacgccgc 1294991
>gb|AC125401.4| Mus musculus BAC clone RP24-538H16 from chromosome 6, complete sequence Length = 130679 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tccctttggacatgaaaaat 297 |||||||||||||||||||| Sbjct: 74786 tccctttggacatgaaaaat 74767
>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence Length = 200968 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 ttacatgaagaagatgtgttttgt 469 |||||| ||||||||||||||||| Sbjct: 38356 ttacatcaagaagatgtgttttgt 38379
>gb|AC158562.8| Mus musculus chromosome 8, clone RP24-275J2, complete sequence Length = 181144 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tttcgtccccatgcagccctggaa 49 |||||||||||||| ||||||||| Sbjct: 141244 tttcgtccccatgctgccctggaa 141221
>gb|AC005743.5| Mus musculus strain 129S6/SvEvTac chromosome 8c1 clone rp21-657p21, complete sequence Length = 185548 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 tttcgtccccatgcagccctggaa 49 |||||||||||||| ||||||||| Sbjct: 69522 tttcgtccccatgctgccctggaa 69499
>gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 180124 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 tccctttggacatgaaaaat 297 |||||||||||||||||||| Sbjct: 22515 tccctttggacatgaaaaat 22496
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctttggacatgaaaaatct 299 |||||||||||||||||||| Sbjct: 67957 cctttggacatgaaaaatct 67938
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aggccaacagcagacccagc 219 |||||||||||||||||||| Sbjct: 1250776 aggccaacagcagacccagc 1250795 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,526,515 Number of Sequences: 3902068 Number of extensions: 3526515 Number of successful extensions: 59896 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59648 Number of HSP's gapped (non-prelim): 248 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)