ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak0a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_197702.1| Oryza sativa (japonica cultivar-group) putative... 92 2e-15
2gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 geno... 92 2e-15
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 92 2e-15
5gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
6gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the ... 44 0.42
7ref|XM_476362.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
8emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on ch... 42 1.7
9gb|AY270607.1| Homo sapiens clone SKG03-G12 putative promoter se... 42 1.7
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
11dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
12ref|XM_715677.1| Candida albicans SC5314 putative monocarboxylat... 40 6.5
13gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 6.5
14gb|AC125401.4| Mus musculus BAC clone RP24-538H16 from chromosom... 40 6.5
15gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, compl... 40 6.5
16gb|AC158562.8| Mus musculus chromosome 8, clone RP24-275J2, comp... 40 6.5
17gb|AC005743.5| Mus musculus strain 129S6/SvEvTac chromosome 8c1 ... 40 6.5
18gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cance... 40 6.5
19dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
20gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.5

>ref|NM_197702.1| Oryza sativa (japonica cultivar-group) putative DNA-binding protein
           (OSJNBa0010C11.7), mRNA
          Length = 576

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                 
Query: 147 caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 472 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 525



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 66  gacgcctactccgccttcctcgcctgccaagcgg 99
           ||||||| ||||||||||||||||| ||||||||
Sbjct: 421 gacgccttctccgccttcctcgcctcccaagcgg 454



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>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete
             sequence
          Length = 147117

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                   
Query: 147   caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200
             ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 19344 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 19291



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 66    gacgcctactccgccttcctcgcctgccaagcgg 99
             ||||||| ||||||||||||||||| ||||||||
Sbjct: 19491 gacgccttctccgccttcctcgcctcccaagcgg 19458



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 147      caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200
                ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 21344331 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 21344278



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 66       gacgcctactccgccttcctcgcctgccaagcgg 99
                ||||||| ||||||||||||||||| ||||||||
Sbjct: 21344478 gacgccttctccgccttcctcgcctcccaagcgg 21344445



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 337     tttacactccaaaaactgcaca 358
               ||||||||||||||||||||||
Sbjct: 9091236 tttacactccaaaaactgcaca 9091257



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                      
Query: 147      caaccgaacggcatggaggcgtacagccggatgatggccatgtaccagaagcta 200
                ||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 21355594 caaccgaacggcatggaggcgtacaaccggatgatggcaatgtaccagaagcta 21355541



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 66       gacgcctactccgccttcctcgcctgccaagcgg 99
                ||||||| ||||||||||||||||| ||||||||
Sbjct: 21355741 gacgccttctccgccttcctcgcctcccaagcgg 21355708



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 337     tttacactccaaaaactgcaca 358
               ||||||||||||||||||||||
Sbjct: 9096375 tttacactccaaaaactgcaca 9096396



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>gb|AC115686.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1325D05,
             complete sequence
          Length = 169500

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 337   tttacactccaaaaactgcaca 358
             ||||||||||||||||||||||
Sbjct: 97488 tttacactccaaaaactgcaca 97467



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>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome
          Length = 10615

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 49   acgccgccgccgtgccggacgc 70
            ||||||||||||||||||||||
Sbjct: 7065 acgccgccgccgtgccggacgc 7086



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>ref|XM_476362.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1764

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 42   ccctggaacgccgccgccgtg 62
            |||||||||||||||||||||
Sbjct: 1338 ccctggaacgccgccgccgtg 1358



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>emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on chromosome 10, complete
              sequence
          Length = 170365

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    agacccagccacgcagctcca 231
              |||||||||||||||||||||
Sbjct: 105084 agacccagccacgcagctcca 105104



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>gb|AY270607.1| Homo sapiens clone SKG03-G12 putative promoter sequence
          Length = 492

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 211 agacccagccacgcagctcca 231
           |||||||||||||||||||||
Sbjct: 166 agacccagccacgcagctcca 146



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     ccctggaacgccgccgccgtg 62
              |||||||||||||||||||||
Sbjct: 163307 ccctggaacgccgccgccgtg 163327



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 280      cctttggacatgaaaaatct 299
                ||||||||||||||||||||
Sbjct: 13149630 cctttggacatgaaaaatct 13149611



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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     ccctggaacgccgccgccgtg 62
              |||||||||||||||||||||
Sbjct: 162606 ccctggaacgccgccgccgtg 162626



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>ref|XM_715677.1| Candida albicans SC5314 putative monocarboxylate permease
           (CaO19_11813), mRNA
          Length = 1941

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 tttgttgtattggaatcatt 381
           ||||||||||||||||||||
Sbjct: 701 tttgttgtattggaatcatt 720



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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      atgcagccctggaacgccgc 55
               ||||||||||||||||||||
Sbjct: 1295010 atgcagccctggaacgccgc 1294991



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>gb|AC125401.4| Mus musculus BAC clone RP24-538H16 from chromosome 6, complete sequence
          Length = 130679

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   tccctttggacatgaaaaat 297
             ||||||||||||||||||||
Sbjct: 74786 tccctttggacatgaaaaat 74767



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>gb|AC093851.5| Homo sapiens chromosome 4 clone RP11-499N1, complete sequence
          Length = 200968

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   ttacatgaagaagatgtgttttgt 469
             |||||| |||||||||||||||||
Sbjct: 38356 ttacatcaagaagatgtgttttgt 38379



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>gb|AC158562.8| Mus musculus chromosome 8, clone RP24-275J2, complete sequence
          Length = 181144

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     tttcgtccccatgcagccctggaa 49
              |||||||||||||| |||||||||
Sbjct: 141244 tttcgtccccatgctgccctggaa 141221



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>gb|AC005743.5| Mus musculus strain 129S6/SvEvTac chromosome 8c1 clone rp21-657p21,
             complete sequence
          Length = 185548

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    tttcgtccccatgcagccctggaa 49
             |||||||||||||| |||||||||
Sbjct: 69522 tttcgtccccatgctgccctggaa 69499



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>gb|AC159138.6| Mus musculus  BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 180124

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   tccctttggacatgaaaaat 297
             ||||||||||||||||||||
Sbjct: 22515 tccctttggacatgaaaaat 22496



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>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0066B06
          Length = 154025

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   cctttggacatgaaaaatct 299
             ||||||||||||||||||||
Sbjct: 67957 cctttggacatgaaaaatct 67938



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     aggccaacagcagacccagc 219
               ||||||||||||||||||||
Sbjct: 1250776 aggccaacagcagacccagc 1250795


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,526,515
Number of Sequences: 3902068
Number of extensions: 3526515
Number of successful extensions: 59896
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59648
Number of HSP's gapped (non-prelim): 248
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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