ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf100b21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8C9W3:ATS2_MOUSE ADAMTS-2 precursor - Mus musculus (Mouse) 32 2.1
2P22002:CAC1C_RAT Voltage-dependent L-type calcium channel subuni... 30 8.0
3Q01815:CAC1C_MOUSE Voltage-dependent L-type calcium channel subu... 30 8.0

>Q8C9W3:ATS2_MOUSE ADAMTS-2 precursor - Mus musculus (Mouse)|
          Length = 1213
 Score = 32.3 bits (72), Expect = 2.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 303 MVMLPPPPAGLRSHASTEPGHGVPRAPASIVQINPM 196
           +++LPPPPA +R  A+TEP  G P   A  +   P+
Sbjct: 26  LLLLPPPPASVRLVAATEPPGGPPGQGAERILAVPV 61



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>P22002:CAC1C_RAT Voltage-dependent L-type calcium channel subunit alpha-1C - Rattus|
            norvegicus (Rat)
          Length = 2169

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 288  PPPAGLRSHASTEPGHGVPRAPASIVQ 208
            P PAG  S  ST  GHG P +PA  VQ
Sbjct: 1808 PHPAGYSSTVSTVEGHGPPLSPAVRVQ 1834



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>Q01815:CAC1C_MOUSE Voltage-dependent L-type calcium channel subunit alpha-1C - Mus|
            musculus (Mouse)
          Length = 2139

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -3

Query: 288  PPPAGLRSHASTEPGHGVPRAPASIVQ 208
            P PAG  S  ST  GHG P +PA  VQ
Sbjct: 1779 PHPAGYSSTVSTVEGHGPPLSPAVRVQ 1805


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 134,248,393
Number of extensions: 2984117
Number of successful extensions: 7195
Number of sequences better than 10.0: 3
Number of HSP's gapped: 7186
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 146
Effective length of database: 70,239,694
Effective search space: 10254995324
Effective search space used: 10254995324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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