ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf100a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC151667.1| Pan troglodytes chromosome X clone RP43-007H19 ma... 44 0.82
2ref|NM_052926.1| Homo sapiens paraneoplastic antigen like 5 (PNM... 44 0.82
3gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, ... 44 0.82
4dbj|AB067521.1| Homo sapiens mRNA for KIAA1934 protein, partial cds 44 0.82
5ref|NM_001069436.1| Oryza sativa (japonica cultivar-group) Os09g... 42 3.3
6gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 42 3.3
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
8dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3

>gb|AC151667.1| Pan troglodytes chromosome X clone RP43-007H19 map human ortholog q28,
              complete sequence
          Length = 200796
 Score = 44.1 bits (22), Expect = 0.82
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 446    tgtcctgtgcattctatagggcaggg 471
              ||||||||||| ||||||||||||||
Sbjct: 167912 tgtcctgtgcagtctatagggcaggg 167887



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>ref|NM_052926.1| Homo sapiens paraneoplastic antigen like 5 (PNMA5), mRNA
 gb|AY121806.1| Homo sapiens BJ-HCC-25 tumor antigen mRNA, complete cds
          Length = 3194

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 446  tgtcctgtgcattctatagggcaggg 471
            ||||||||||| ||||||||||||||
Sbjct: 2919 tgtcctgtgcagtctatagggcaggg 2944



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>gb|U82671.5| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 324604

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 446    tgtcctgtgcattctatagggcaggg 471
              ||||||||||| ||||||||||||||
Sbjct: 277861 tgtcctgtgcagtctatagggcaggg 277836



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>dbj|AB067521.1| Homo sapiens mRNA for KIAA1934 protein, partial cds
          Length = 3194

 Score = 44.1 bits (22), Expect = 0.82
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 446  tgtcctgtgcattctatagggcaggg 471
            ||||||||||| ||||||||||||||
Sbjct: 2919 tgtcctgtgcagtctatagggcaggg 2944



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>ref|NM_001069436.1| Oryza sativa (japonica cultivar-group) Os09g0330700 (Os09g0330700)
           mRNA, complete cds
          Length = 2049

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 555 tccggtggtccgccgcggcat 575
           |||||||||||||||||||||
Sbjct: 120 tccggtggtccgccgcggcat 140



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 687    gttcaacgctcagtcgagtgg 707
              |||||||||||||||||||||
Sbjct: 960111 gttcaacgctcagtcgagtgg 960131



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 555     tccggtggtccgccgcggcat 575
               |||||||||||||||||||||
Sbjct: 9804470 tccggtggtccgccgcggcat 9804490



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>dbj|AP005863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0040N23
          Length = 101061

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 555   tccggtggtccgccgcggcat 575
             |||||||||||||||||||||
Sbjct: 76889 tccggtggtccgccgcggcat 76909


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 114,227,490
Number of extensions: 5674699
Number of successful extensions: 100261
Number of sequences better than 10.0: 8
Number of HSP's gapped: 100261
Number of HSP's successfully gapped: 8
Length of query: 864
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 842
Effective length of database: 18,508,616,841
Effective search space: 15584255380122
Effective search space used: 15584255380122
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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