ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf100a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q5PQR5:IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP... 303 8e-82
2Q8VHZ7:IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein I... 303 8e-82
3Q5R947:IMP4_PONPY U3 small nucleolar ribonucleoprotein protein I... 303 1e-81
4Q96G21:IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein I... 303 1e-81
5Q0VD01:IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein I... 301 4e-81
6O62518:YHPK_CAEEL Brix domain-containing protein ZK795.3 - Caeno... 283 1e-75
7Q6C804:IMP4_YARLI U3 small nucleolar ribonucleoprotein protein I... 260 1e-68
8O13823:IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein i... 259 2e-68
9Q6BYD9:IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein I... 256 2e-67
10Q6FNN7:IMP4_CANGA U3 small nucleolar ribonucleoprotein protein I... 255 3e-67
11Q755T8:IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein I... 252 3e-66
12P53941:IMP4_YEAST U3 small nucleolar ribonucleoprotein protein I... 251 5e-66
13P54073:YUY1_CAEEL Brix domain-containing protein F44G4.1 - Caeno... 156 2e-37
14Q8AVP1:RPF1_XENLA Ribosome production factor 1 - Xenopus laevis ... 154 8e-37
15Q5R631:RPF1_PONPY Ribosome production factor 1 - Pongo pygmaeus ... 150 1e-35
16Q9H9Y2:RPF1_HUMAN Ribosome production factor 1 - Homo sapiens (H... 150 1e-35
17Q7TND5:RPF1_MOUSE Ribosome production factor 1 - Mus musculus (M... 149 2e-35
18Q5RJS9:RPF1_RAT Ribosome production factor 1 - Rattus norvegicus... 147 1e-34
19Q9VKB4:RPF1_DROME Probable ribosome production factor 1 - Drosop... 147 1e-34
20Q6IQU6:RPF1_DANRE Ribosome production factor 1 - Danio rerio (Ze... 139 3e-32
21O14180:YDS4_SCHPO Brix domain-containing protein C4F8.04 - Schiz... 124 1e-27
22P38805:RPF1_YEAST Ribosome production factor 1 - Saccharomyces c... 111 6e-24
23Q9V200:BRIX_PYRAB Probable brix domain-containing ribosomal biog... 44 0.001
24Q9YC08:BRIX_AERPE Probable brix domain-containing ribosomal biog... 43 0.003
25Q8TZI2:BRIX_PYRFU Probable brix domain-containing ribosomal biog... 43 0.003
26Q5JDM5:BRIX_PYRKO Probable brix domain-containing ribosomal biog... 41 0.012
27O74104:BRIX_PYRHO Probable brix domain-containing ribosomal biog... 41 0.012
28Q8UVY2:BXDC2_XENLA Brix domain-containing protein 2 - Xenopus la... 40 0.021
29Q975H1:BRIX_SULTO Probable brix domain-containing ribosomal biog... 40 0.028
30Q9HGL6:BRX1_SCHPO Ribosome biogenesis protein Brix homolog - Sch... 39 0.047
31Q8TDN6:BXDC2_HUMAN Brix domain-containing protein 2 - Homo sapie... 39 0.062
32Q3SZZ0:BXDC2_BOVIN Brix domain-containing protein 2 - Bos taurus... 38 0.081
33Q6M0M3:BRIX_METMP Probable brix domain-containing ribosomal biog... 38 0.11
34Q5RAN2:BXDC2_PONPY Brix domain-containing protein 2 - Pongo pygm... 37 0.14
35Q9UXB9:BRIX_SULSO Probable brix domain-containing ribosomal biog... 37 0.14
36Q4QQT6:BXDC2_RAT Brix domain-containing protein 2 - Rattus norve... 37 0.23
37Q9DCA5:BXDC2_MOUSE Brix domain-containing protein 2 - Mus muscul... 37 0.23
38P34524:YM63_CAEEL Brix domain-containing protein K12H4.3 - Caeno... 35 0.52
39Q8ZVN2:BRIX_PYRAE Probable brix domain-containing ribosomal biog... 35 0.52
40Q97AH7:SYA_THEVO Alanyl-tRNA synthetase - Thermoplasma volcanium 35 0.68
41Q08235:BRX1_YEAST Ribosome biogenesis protein BRX1 - Saccharomyc... 34 1.5
42Q12153:SSF2_YEAST Ribosome biogenesis protein SSF2 - Saccharomyc... 33 3.4
43Q9PTG6:DCTN2_CHICK Dynactin subunit 2 - Gallus gallus (Chicken) 32 5.8
44Q7MAE6:ARGD_WOLSU Acetylornithine aminotransferase - Wolinella s... 32 5.8

>Q5PQR5:IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 - Rattus|
           norvegicus (Rat)
          Length = 291
 Score =  303 bits (777), Expect = 8e-82
 Identities = 154/289 (53%), Positives = 205/289 (70%), Gaps = 1/289 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  RLRREYLYRK+ E  +R   EKK RV+ ALEE + IPT            ++ D
Sbjct: 1   MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           D       S +DDEY  A + +PK+++TTSR+PS+ L  F KELK+VFP +QRMNRG   
Sbjct: 61  DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           +  +V +C+++ +TDL++VHEHRG P GLIV HLP GPTAYF L NVV RHDI D   +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
            MSEA PHLI   F+++ G+R ++I+++LFPVPK DS R+ITFAN+DDYISFRHH+Y+K 
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK- 236

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQ 982
              ++++L EVGPRFEL+LY I+ GT++Q + A  E+   PY NTA+K+
Sbjct: 237 TDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKR 285



to top

>Q8VHZ7:IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 - Mus musculus|
           (Mouse)
          Length = 291

 Score =  303 bits (777), Expect = 8e-82
 Identities = 154/289 (53%), Positives = 205/289 (70%), Gaps = 1/289 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  RLRREYLYRK+ E  +R   EKK RV+ ALEE + IPT            ++ D
Sbjct: 1   MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFD 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           D       S +DDEY  A + +PK+++TTSR+PS+ L  F KELK+VFP +QRMNRG   
Sbjct: 61  DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           +  +V +C+++ +TDL++VHEHRG P GLIV HLP GPTAYF L NVV RHDI D   +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
            MSEA PHLI   F+++ G+R ++I+++LFPVPK DS R+ITFAN+DDYISFRHH+Y+K 
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK- 236

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQ 982
              ++++L EVGPRFEL+LY I+ GT++Q + A  E+   PY NTA+K+
Sbjct: 237 TDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKR 285



to top

>Q5R947:IMP4_PONPY U3 small nucleolar ribonucleoprotein protein IMP4 - Pongo pygmaeus|
           (Orangutan)
          Length = 291

 Score =  303 bits (776), Expect = 1e-81
 Identities = 153/289 (52%), Positives = 205/289 (70%), Gaps = 1/289 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  RLRREYLYRK+ E  +R   E+K R+R ALEE + IPT            ++ D
Sbjct: 1   MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           D       S +DDEY  A + +PK+++TTSR+PS+ L  F KELK+VFP +QRMNRG   
Sbjct: 61  DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           +  +V +C+++ +TDL++VHEHRG P GLIV HLP GPTAYF L NVV RHDI D   +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
            MSEA PHLI   F+++ G+R ++I+++LFPVPK DS R+ITFAN+DDYISFRHH+Y+K 
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK- 236

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQ 982
              ++++L EVGPRFEL+LY I+ GT++Q + A  E+   PY NTA+K+
Sbjct: 237 TDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKR 285



to top

>Q96G21:IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 - Homo sapiens|
           (Human)
          Length = 291

 Score =  303 bits (776), Expect = 1e-81
 Identities = 153/289 (52%), Positives = 205/289 (70%), Gaps = 1/289 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  RLRREYLYRK+ E  +R   E+K R+R ALEE + IPT            ++ D
Sbjct: 1   MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFD 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           D       S +DDEY  A + +PK+++TTSR+PS+ L  F KELK+VFP +QRMNRG   
Sbjct: 61  DAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           +  +V +C+++ +TDL++VHEHRG P GLIV HLP GPTAYF L NVV RHDI D   +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
            MSEA PHLI   F+++ G+R ++I+++LFPVPK DS R+ITFAN+DDYISFRHH+Y+K 
Sbjct: 178 TMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKK- 236

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQ 982
              ++++L EVGPRFEL+LY I+ GT++Q + A  E+   PY NTA+K+
Sbjct: 237 TDHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKR 285



to top

>Q0VD01:IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 - Bos taurus|
           (Bovine)
          Length = 291

 Score =  301 bits (771), Expect = 4e-81
 Identities = 152/289 (52%), Positives = 205/289 (70%), Gaps = 1/289 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  RLRREYLYRK+ E  ER   E+K +VR ALEE + IPT            ++ D
Sbjct: 1   MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFD 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           D       + +DDEY  A + +PK+++TTSR+PS+ L  F KELK+VFP +QRMNRG   
Sbjct: 61  DAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHE 120

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           +  +V +C+++ +TDL++VHEHRG P GLIV HLP GPTAYF L NVV RHDI D   +G
Sbjct: 121 VGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LG 177

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
             SEA PHLI+  F+++ G+R ++I+++LFPVPK DS+R+ITFAN+DDYISFRHH+Y+K 
Sbjct: 178 TASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKK- 236

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQ 982
              ++++L EVGPRFEL+LY I+ GT++Q + A  E+   PY NTA K+
Sbjct: 237 TNHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKR 285



to top

>O62518:YHPK_CAEEL Brix domain-containing protein ZK795.3 - Caenorhabditis elegans|
          Length = 292

 Score =  283 bits (724), Expect = 1e-75
 Identities = 144/294 (48%), Positives = 196/294 (66%), Gaps = 1/294 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           M+RR  RLRRE+++RKSLE K++   EK+ ++R ALE    I               D  
Sbjct: 1   MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWG 60

Query: 299 DQDRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
            Q         D EY  A  ++PKI++TTSR+PS+ L  F KE+K++FPN+QR+NRG   
Sbjct: 61  GQQYET-----DSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYD 115

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           + ++V++ ++ + TDLI+  E RG PDG++VCHLP GPTA+F + NVV RHDI +    G
Sbjct: 116 VKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDIPN---CG 172

Query: 659 KMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDDYISFRHHIYEKH 838
            MSE YPHLI DN  +K G R   I+KHLFPVPKPDSKR+ITF+N +DYISFRHH+Y K 
Sbjct: 173 TMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVY-KT 231

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQ-SEAQNEFVLRPYMNTAKKQKSLGV 997
                ++L E GPRFEL+ YQIK GT++  + A++E+VLR Y NTA+K+  L +
Sbjct: 232 ENDGEVELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFLSI 285



to top

>Q6C804:IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 - Yarrowia|
           lipolytica (Candida lipolytica)
          Length = 283

 Score =  260 bits (664), Expect = 1e-68
 Identities = 139/294 (47%), Positives = 191/294 (64%), Gaps = 3/294 (1%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXI-DL 295
           M+RR  R RREYLYRKSL+ +E    +K+++++ AL  GKP+P               D 
Sbjct: 1   MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDEELRKTIAYDE 60

Query: 296 DDQDRAVPRSIIDDEYAGAT-LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGG 472
             QD       IDDEY+  + + +PK+++TTSR+PS  L+QF KE+K++FP S R+NRGG
Sbjct: 61  SVQDE------IDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGG 114

Query: 473 QVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKA 652
            V+  +V +C++   +DLI++HEHRG P  + V H P GPTAYF L NVV RHD+ D   
Sbjct: 115 TVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD--- 171

Query: 653 MGKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHIY 829
            G MSE +PHLI DNFTT  G+R   I+KHLFP   K DS R+ITFANR D+IS R H+Y
Sbjct: 172 TGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVY 231

Query: 830 EKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQKSL 991
            K    + ++L EVGPRFE+RLY ++ GT++  +A  E+ +  +M TA K+  L
Sbjct: 232 VK--TREGVELAEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283



to top

>O13823:IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 289

 Score =  259 bits (662), Expect = 2e-68
 Identities = 138/285 (48%), Positives = 187/285 (65%), Gaps = 4/285 (1%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  R RR+++Y+++ E +E +  EK+R +R+ALE  K +                  
Sbjct: 1   MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQEDSQLQKDY--KY 58

Query: 299 DQDRAVPRSI---IDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRG 469
           D+ RA        +DDEY     REPK+L+TTSR PS+ L QF KE++++ PNS R+NRG
Sbjct: 59  DESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRG 118

Query: 470 GQVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRK 649
             V+  +VE+ R+++ITD++++HEHRG PDGL++ HLP GPT  F L NVV RHDI +  
Sbjct: 119 NIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPN-- 176

Query: 650 AMGKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHI 826
             G MSEAYPHLI +N T+K G+R    +  LFP  PK  + R++TFAN DDYISFRHHI
Sbjct: 177 -TGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHI 235

Query: 827 YEKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPY 961
           Y K  GPK I L E GPRFE++L++I  GTVD  +A  E+ L+PY
Sbjct: 236 YAK-TGPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279



to top

>Q6BYD9:IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 - Debaryomyces|
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 284

 Score =  256 bits (653), Expect = 2e-67
 Identities = 134/294 (45%), Positives = 194/294 (65%), Gaps = 2/294 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           M+R+  R RREYLYRKSLE +E    EK+++++ AL  GKP+              I  D
Sbjct: 1   MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDKELQKDFI-YD 59

Query: 299 DQDRAVPRSIIDDEYAGAT-LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQ 475
           + ++      IDDEY   + + EPK+L+TTSRNPS  L QF KE+K++FPNS ++NRG  
Sbjct: 60  ESEQTE----IDDEYLALSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNY 115

Query: 476 VISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAM 655
           VI+++V +C+  +I+DLI++HEHRG P  L + H P GP+  F L NV  RHD+ +   +
Sbjct: 116 VITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---I 172

Query: 656 GKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHIYE 832
           G  SE+YPHL+ +NFT++ G+R   IMKHLFP   K DS R+ITF N DD+IS RHH+Y 
Sbjct: 173 GNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYV 232

Query: 833 KHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQKSLG 994
           K     +++L EVGPRFE+RLY+++ G +D  +++ E+ LR ++ T  ++  LG
Sbjct: 233 K--TKDTVELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284



to top

>Q6FNN7:IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 - Candida|
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 288

 Score =  255 bits (651), Expect = 3e-67
 Identities = 135/297 (45%), Positives = 195/297 (65%), Gaps = 6/297 (2%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXX---- 286
           MLRR  R RREYLYRK+ E +E Q  +K++ +++AL +GKP+P                 
Sbjct: 1   MLRRQARERREYLYRKAQELQETQLQQKRQIIKQALAQGKPLPKELAEDEQLQKDFRYDQ 60

Query: 287 IDLDDQDRAVPRSIIDDEYAGAT-LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMN 463
              D++D A     +DDEY+ ++ + E ++++TTSR+PS+ L QF KE+K++FPN+ R+N
Sbjct: 61  SMADNEDEAG----VDDEYSASSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLN 116

Query: 464 RGGQVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKD 643
           RG  V++++V +C+    TDLI++HEHRG P  L V H P GPTA+F L NVV RHDI +
Sbjct: 117 RGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILN 176

Query: 644 RKAMGKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRH 820
           R   G  SE  PHLI DNFTT  G R   I+K+LFP  PK DS R+ITFANR D+IS R 
Sbjct: 177 R---GNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQ 233

Query: 821 HIYEKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQKSL 991
           H+Y +      +++ EVGPRFE+RL++++ GT++  +A  E+ LR ++ TA ++  L
Sbjct: 234 HVYVR--TKDGVEMAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288



to top

>Q755T8:IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 - Ashbya gossypii|
           (Yeast) (Eremothecium gossypii)
          Length = 283

 Score =  252 bits (643), Expect = 3e-66
 Identities = 133/293 (45%), Positives = 189/293 (64%), Gaps = 2/293 (0%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLD 298
           MLRR  R RREYLYRK+ E +E Q  +K+  +++AL +GKP+P             +  D
Sbjct: 1   MLRRQARERREYLYRKAQELQESQLQQKRDLIKQALAQGKPLPKEVADDTK-----LQRD 55

Query: 299 DQDRAVPRSIIDDEYAGAT-LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQ 475
            Q     +  IDDEY+  + + +PK+++TTSR+PS  L+QF KE+K++FP S R+NRG  
Sbjct: 56  YQYDESAQESIDDEYSALSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNY 115

Query: 476 VISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAM 655
           ++  +V++C+    TDL+++HEHRG P  L + H P GPTA F L NVV RHDI +    
Sbjct: 116 IMKNLVDACQKSGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILN---A 172

Query: 656 GKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHHIYE 832
           G  SE +PHLI DNFTT  G+R   I+KH+FP   K DS R+ITFANR D+IS R H+Y 
Sbjct: 173 GNQSEVHPHLIFDNFTTPLGQRVVKILKHMFPPGVKRDSPRVITFANRGDFISVRQHVYV 232

Query: 833 KHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQKSL 991
           K      ++L EVGPRFE++LY++  GT++  +A  E+ LR ++ TA ++  L
Sbjct: 233 K--TRDGVELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKDYL 283



to top

>P53941:IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 290

 Score =  251 bits (641), Expect = 5e-66
 Identities = 133/296 (44%), Positives = 193/296 (65%), Gaps = 5/296 (1%)
 Frame = +2

Query: 119 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIP---TXXXXXXXXXXXXI 289
           MLRR  R RREYLYRK+ E ++ Q  +K++ +++AL +GKP+P                 
Sbjct: 1   MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60

Query: 290 DLDDQDRAVPRSIIDDEYAGAT-LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNR 466
            L + + A    + DDEYA  + + +P+I++TTSR+PS  L+QF KE+K++FPN+ R+NR
Sbjct: 61  SLKESEEADDLQV-DDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNR 119

Query: 467 GGQVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDR 646
           G  V+  +V++C+    TDL+++HEHRG P  L + H P GPTA F L NVV RHDI + 
Sbjct: 120 GNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDIIN- 178

Query: 647 KAMGKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDDYISFRHH 823
              G  SE  PHLI DNFTT  G+R   I+KHLF   PK DS+R+ITFANR D+IS R H
Sbjct: 179 --AGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQH 236

Query: 824 IYEKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQKSL 991
           +Y +    + +++ EVGPRFE+RL++++ GT++  +A  E+ LR ++ TA K+  L
Sbjct: 237 VYVR--TREGVEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290



to top

>P54073:YUY1_CAEEL Brix domain-containing protein F44G4.1 - Caenorhabditis elegans|
          Length = 384

 Score =  156 bits (395), Expect = 2e-37
 Identities = 96/282 (34%), Positives = 157/282 (55%), Gaps = 8/282 (2%)
 Frame = +2

Query: 161 RKSLEGKERQHYEKKRRVREALEEGKP---IPTXXXXXXXXXXXXIDLDDQDRAVPRSII 331
           +++L   +R    ++ ++R+ L E  P   +P             ++ +D +  V     
Sbjct: 106 KRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMREYDATMVNEEDDE--VEHDEA 163

Query: 332 DDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCR 505
           +DE+A    RE  PK+++T +        +F  EL+   PNS+   R   ++  I+E  +
Sbjct: 164 NDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAK 223

Query: 506 SHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYPHL 685
             E TDL++VHE R +P+G+I CHLP GPTAYF + ++    D+   K  G+ +  +P +
Sbjct: 224 EREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDL---KKFGESTSHFPEV 280

Query: 686 ILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYE-KHGGPKSID 859
           IL+NF T+ G   A ++  LFP  PK   +R++TF N+ DYI FRHH YE K  G K+  
Sbjct: 281 ILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA- 339

Query: 860 LKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPY-MNTAKKQ 982
           L E+GPRF LRL  +++GT D    + E+VL+ + M T++++
Sbjct: 340 LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRR 381



to top

>Q8AVP1:RPF1_XENLA Ribosome production factor 1 - Xenopus laevis (African clawed frog)|
          Length = 343

 Score =  154 bits (389), Expect = 8e-37
 Identities = 98/291 (33%), Positives = 164/291 (56%), Gaps = 11/291 (3%)
 Frame = +2

Query: 143 RREYLYRKSLEGKERQHY---EKKRRVREALEEG---KPIPTXXXXXXXXXXXXIDLDDQ 304
           RR++++ K  + K ++     +K+++ REAL +    KP+P             +D  D+
Sbjct: 56  RRQFMFIKLKQEKRKEKLILRKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADE 115

Query: 305 DRAVPRSIIDDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 478
           + A+  +   DE+A    ++  PKIL+TTS  P     +F ++L  + PNS    R G  
Sbjct: 116 EVALDEAT--DEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLA 173

Query: 479 ISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
           + +I+  C S + TDL++++E R  P+GL++CHLP GPTA+F + NV  R   K+ K  G
Sbjct: 174 LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLR---KEMKRKG 230

Query: 659 K-MSEAYPHLILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYE 832
           K  +E  P +IL+NFTT+ G     +   L+P  P    +++ TF N+ DYI FR+H Y 
Sbjct: 231 KEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRY- 289

Query: 833 KHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFV-LRPYMNTAKKQ 982
                K + ++E+GPRF L+L  +++GT D    + E+V  R  M+T++++
Sbjct: 290 LFKSEKKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRK 340



to top

>Q5R631:RPF1_PONPY Ribosome production factor 1 - Pongo pygmaeus (Orangutan)|
          Length = 349

 Score =  150 bits (378), Expect = 1e-35
 Identities = 99/282 (35%), Positives = 158/282 (56%), Gaps = 9/282 (3%)
 Frame = +2

Query: 164 KSLEGKERQHYEKK-RRVREALEEG---KPIPTXXXXXXXXXXXXIDLDDQDRAVPRSII 331
           K  + KE+   +KK ++ REAL +    KP+P             +D +D++ A   +  
Sbjct: 71  KQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEAT- 129

Query: 332 DDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCR 505
            DE+A    ++  PKIL+TTS  P     +  ++L  V PNS    R G  + +I+  C 
Sbjct: 130 -DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCI 188

Query: 506 SHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPH 682
           + + TDLI+++E R  P+GLI+ HLP GPTA+F + +V  R +IK R   GK  +E  P 
Sbjct: 189 ARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRR---GKDPTEHIPE 245

Query: 683 LILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYEKHGGPKSID 859
           +IL+NFTT+ G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + 
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFRSEKKVG 304

Query: 860 LKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRP-YMNTAKKQ 982
           ++E+GPRF L+L  +++GT D    + E+V +P  M+T++++
Sbjct: 305 IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRK 346



to top

>Q9H9Y2:RPF1_HUMAN Ribosome production factor 1 - Homo sapiens (Human)|
          Length = 349

 Score =  150 bits (378), Expect = 1e-35
 Identities = 99/282 (35%), Positives = 158/282 (56%), Gaps = 9/282 (3%)
 Frame = +2

Query: 164 KSLEGKERQHYEKK-RRVREALEEG---KPIPTXXXXXXXXXXXXIDLDDQDRAVPRSII 331
           K  + KE+   +KK ++ REAL +    KP+P             +D +D++ A   +  
Sbjct: 71  KQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEAT- 129

Query: 332 DDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCR 505
            DE+A    ++  PKIL+TTS  P     +  ++L  V PNS    R G  + +I+  C 
Sbjct: 130 -DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCI 188

Query: 506 SHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPH 682
           + + TDLI+++E R  P+GLI+ HLP GPTA+F + +V  R +IK R   GK  +E  P 
Sbjct: 189 ARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRR---GKDPTEHIPE 245

Query: 683 LILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYEKHGGPKSID 859
           +IL+NFTT+ G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + 
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFRSEKKVG 304

Query: 860 LKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRP-YMNTAKKQ 982
           ++E+GPRF L+L  +++GT D    + E+V +P  M+T++++
Sbjct: 305 IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRK 346



to top

>Q7TND5:RPF1_MOUSE Ribosome production factor 1 - Mus musculus (Mouse)|
          Length = 349

 Score =  149 bits (376), Expect = 2e-35
 Identities = 99/282 (35%), Positives = 158/282 (56%), Gaps = 9/282 (3%)
 Frame = +2

Query: 164 KSLEGKERQHYEKK-RRVREALEEG---KPIPTXXXXXXXXXXXXIDLDDQDRAVPRSII 331
           K  + KE+   +KK ++ REAL +    KP+P             +D +D++ A   +  
Sbjct: 71  KQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEAT- 129

Query: 332 DDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCR 505
            DE+A    R+  PKIL+TTS  P     +  ++L  V P+S    R G  + +I+  C 
Sbjct: 130 -DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCI 188

Query: 506 SHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPH 682
           + + TDLI+++E R  P+GLI+ HLP GPTA+F + +V  R +IK R   GK  +E  P 
Sbjct: 189 ARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRR---GKDPTEHVPE 245

Query: 683 LILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYEKHGGPKSID 859
           +IL+NFTT+ G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + 
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFKSEKKVG 304

Query: 860 LKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRP-YMNTAKKQ 982
           ++E+GPRF L+L  +++GT D    + E+V +P  M+T++++
Sbjct: 305 IQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRK 346



to top

>Q5RJS9:RPF1_RAT Ribosome production factor 1 - Rattus norvegicus (Rat)|
          Length = 345

 Score =  147 bits (370), Expect = 1e-34
 Identities = 97/270 (35%), Positives = 149/270 (55%), Gaps = 8/270 (2%)
 Frame = +2

Query: 164 KSLEGKERQHYEKK-RRVREALEEG---KPIPTXXXXXXXXXXXXIDLDDQDRAVPRSII 331
           K  + KE+   +KK +R REAL +    KP+P             +D +D++ A   +  
Sbjct: 71  KQQQRKEKLAAKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEAT- 129

Query: 332 DDEYAGATLRE--PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCR 505
            DE+A    R+  PKIL+TTS  P     +  ++L  V P+S    R G  + +I+  C 
Sbjct: 130 -DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCI 188

Query: 506 SHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPH 682
           + + TDLI+++E R  P+GLI+ HLP GPTA+F + +V  R +IK R   GK  +E  P 
Sbjct: 189 ARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRR---GKDPTEHVPE 245

Query: 683 LILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYEKHGGPKSID 859
           +IL+NFTT+ G     +   LFP  P+   +++ TF N+ DYI FR H Y      K + 
Sbjct: 246 IILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRY-IFKSEKKVG 304

Query: 860 LKEVGPRFELRLYQIKRGTVDQSEAQNEFV 949
           ++E+GPRF L+L  +++GT D    + E+V
Sbjct: 305 IQELGPRFTLKLRSLQKGTFDSKYGEYEWV 334



to top

>Q9VKB4:RPF1_DROME Probable ribosome production factor 1 - Drosophila melanogaster|
           (Fruit fly)
          Length = 394

 Score =  147 bits (370), Expect = 1e-34
 Identities = 93/275 (33%), Positives = 149/275 (54%), Gaps = 5/275 (1%)
 Frame = +2

Query: 143 RREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLDDQDRA-VP 319
           +R  LY+K  + K ++  +++R  R+A     P  T             +L+D D   + 
Sbjct: 108 QRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQ 167

Query: 320 RSIIDDEYAGATLR--EPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIV 493
           + +  D+++    R  EPK+L+T + NP     +F  EL  +FPN+    R    + +I 
Sbjct: 168 KELQLDDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKIC 227

Query: 494 ESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIK-DRKAMGKMSE 670
           +S    E TD+++V+E R +P+GL+V HLP GPTA+F L NV    DIK D K   ++++
Sbjct: 228 KSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHK---EITK 284

Query: 671 AYPHLILDNFTTKTGERTANIMKHLF-PVPKPDSKRLITFANRDDYISFRHHIYEKHGGP 847
             P +IL+NFTT+ G     ++  LF   P+   +R +TF N+ DYI FRHH YE     
Sbjct: 285 HRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEG 344

Query: 848 KSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVL 952
           K + L+E+GPRF L+L  ++ GT D       +++
Sbjct: 345 KRVKLRELGPRFTLKLRSLQEGTFDSKTGDYAWII 379



to top

>Q6IQU6:RPF1_DANRE Ribosome production factor 1 - Danio rerio (Zebrafish) (Brachydanio|
           rerio)
          Length = 330

 Score =  139 bits (349), Expect = 3e-32
 Identities = 88/289 (30%), Positives = 153/289 (52%), Gaps = 8/289 (2%)
 Frame = +2

Query: 143 RREYLYRKSLEGKERQHYE---KKRRVREALEEGKP---IPTXXXXXXXXXXXXIDLDDQ 304
           RR  ++ K  E K ++  E   KK++ R+AL++  P   +P             ++ +D+
Sbjct: 43  RRHTMFLKLKEEKRKKRMELKKKKKKERKALDDKAPPKEVPKTIENQRIYDETTVNPEDE 102

Query: 305 DRAVPRSIIDDEYAGATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVIS 484
           + A      +       L  PK+L+TTS  P     +F  +L  V P++    R G  + 
Sbjct: 103 EVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALK 162

Query: 485 EIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK- 661
           +++  C S   T L++++E R  P+G+++CHLP GPTA+F + +V  R ++K R   GK 
Sbjct: 163 KVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRR---GKN 219

Query: 662 MSEAYPHLILDNFTTKTGERTANIMKHLFP-VPKPDSKRLITFANRDDYISFRHHIYEKH 838
            +E  P +IL+NFTT+ G     +   LFP  P+   +++ TF N+ D+I FR H Y   
Sbjct: 220 PTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRY-IF 278

Query: 839 GGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQK 985
              K + ++E+GPRF L+L  +++GT D    + E+V + +   + ++K
Sbjct: 279 KNEKKVGIQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRK 327



to top

>O14180:YDS4_SCHPO Brix domain-containing protein C4F8.04 - Schizosaccharomyces pombe|
           (Fission yeast)
          Length = 306

 Score =  124 bits (310), Expect = 1e-27
 Identities = 83/263 (31%), Positives = 134/263 (50%), Gaps = 10/263 (3%)
 Frame = +2

Query: 179 KERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXXIDLDDQDRAVPRSIIDDEYAGATL 358
           KER   E+K   ++ L   + IP             I+ D  D  +   + DDE++    
Sbjct: 30  KERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIE-DKPDEELQAELKDDEFSAYFS 88

Query: 359 RE---PKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV-ISEIVESCRSHEITDL 526
            E   PK+L+TTS+  S     F  EL   FPN++   R G + + EI E+      TDL
Sbjct: 89  EERKVPKLLVTTSKRASRKCYDFASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDL 148

Query: 527 ILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYPHLILDNFTT 706
           ++++E R + + L + HLP GP+ YF L N+ T  +I +    G+ +   P LI++NF+T
Sbjct: 149 LVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNH---GRSTGHIPELIINNFST 205

Query: 707 KTGERTANIMKHLF-PVPKPDSKRLITFANRDDYISFRHHIY---EKHGGPKSI--DLKE 868
           + G   A   + LF   P+   ++++T   + D++ FR H Y   EK   P  I   L+E
Sbjct: 206 RLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTGLQE 265

Query: 869 VGPRFELRLYQIKRGTVDQSEAQ 937
           +GPRF +RL  +++G  D+ E +
Sbjct: 266 LGPRFTMRLRMVQKGVWDRKEGE 288



to top

>P38805:RPF1_YEAST Ribosome production factor 1 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 295

 Score =  111 bits (278), Expect = 6e-24
 Identities = 84/300 (28%), Positives = 146/300 (48%), Gaps = 10/300 (3%)
 Frame = +2

Query: 113 GEMLRRNTRLRREYLYR--KSLEGKERQHYEKKRRVREALEEGKPIPTXXXXXXXXXXXX 286
           G  +    +L+R+ ++   K  + KER H  +++R +E  E   P               
Sbjct: 4   GNEINITNKLKRQEIFADIKHEKNKER-HTMRRKRAKE--ERENPELREQRLKENVTQTI 60

Query: 287 IDLDDQDRAVPRSIIDDE-----YAGATLREP-KILLTTSRNPSAPLTQFVKELKVVFPN 448
            +    D  + + +  DE     Y  +   EP KI LTT+ N      +F   L  + PN
Sbjct: 61  ENTRVYDETINKEVEGDEDDLMRYFNSNSNEPPKIFLTTNVNAKKSAYEFANILIEILPN 120

Query: 449 SQRMNRG-GQVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVT 625
              + R  G  + EI + C     TD+++++E + +  GL   HLP GPT YF L + V 
Sbjct: 121 VTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFV- 179

Query: 626 RHDIKDRKAMGKMSEAYPHLILDNFTTKTGERTANIMKHLFPV-PKPDSKRLITFANRDD 802
             ++K     G+ +   P LIL+NF T+ G+    + + + P  P  + +++IT  N+ D
Sbjct: 180 --EVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRD 237

Query: 803 YISFRHHIYEKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFVLRPYMNTAKKQ 982
           YI FR H Y      + + L+E+GP+F L+L +++RG  +++E ++    +P M+  KK+
Sbjct: 238 YIFFRRHRYVFKDNER-VGLQELGPQFTLKLKRLQRGIKEETEWEH----KPEMDKEKKK 292



to top

>Q9V200:BRIX_PYRAB Probable brix domain-containing ribosomal biogenesis protein -|
           Pyrococcus abyssi
          Length = 224

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 28/96 (29%), Positives = 49/96 (51%)
 Frame = +2

Query: 371 ILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRG 550
           +L+TTS  P+     F  +L+ VFPNS  M RG + I E++          L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 551 QPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
            P  L +  + + P  + G L  +  H +K ++ MG
Sbjct: 62  NP--LKMTFIKVHPDDW-GYLGYLYLHGVKLQREMG 94



to top

>Q9YC08:BRIX_AERPE Probable brix domain-containing ribosomal biogenesis protein -|
           Aeropyrum pernix
          Length = 180

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +2

Query: 377 LTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRGQP 556
           +TTSR PS  +  FVK+L    P + R  RG   + E+           +++V E RG P
Sbjct: 1   MTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP 60

Query: 557 DGLIVCHLPLGP 592
            G+I  +   GP
Sbjct: 61  -GIIRVYAVEGP 71



to top

>Q8TZI2:BRIX_PYRFU Probable brix domain-containing ribosomal biogenesis protein -|
           Pyrococcus furiosus
          Length = 223

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 28/96 (29%), Positives = 49/96 (51%)
 Frame = +2

Query: 371 ILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRG 550
           +L+TTS  P+     F  +L+ VFPNS  + RG + I E++          L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKG 61

Query: 551 QPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
            P  L +  + + P  + G L  +  H IK ++ MG
Sbjct: 62  NP--LKMTFIKVHPEDW-GYLGYLYLHGIKLQREMG 94



to top

>Q5JDM5:BRIX_PYRKO Probable brix domain-containing ribosomal biogenesis protein -|
           Pyrococcus kodakaraensis (Thermococcus kodakaraensis)
          Length = 208

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 25/96 (26%), Positives = 49/96 (51%)
 Frame = +2

Query: 371 ILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRG 550
           +L+TTS  P+     F  +L+ VFPNS  + RG + I +++          L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLEKVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61

Query: 551 QPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
            P  L +  + + P  + G +  +  H IK ++ +G
Sbjct: 62  NP--LKMTFIKVDPEDW-GYIGYLYLHGIKLQREIG 94



to top

>O74104:BRIX_PYRHO Probable brix domain-containing ribosomal biogenesis protein -|
           Pyrococcus horikoshii
          Length = 224

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 26/96 (27%), Positives = 48/96 (50%)
 Frame = +2

Query: 371 ILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRG 550
           +L+TTS  P+     F  +L+ V PNS  + RG + I E++          L++++  +G
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 551 QPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMG 658
            P  L +  + + P  + G L  +  H +K ++ MG
Sbjct: 62  NP--LKMTFIKVHPEDW-GYLGYLYLHGVKLQREMG 94



to top

>Q8UVY2:BXDC2_XENLA Brix domain-containing protein 2 - Xenopus laevis (African clawed|
           frog)
          Length = 339

 Score = 40.0 bits (92), Expect = 0.021
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
 Frame = +2

Query: 347 GATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEI 517
           G    + ++L+ +SR  +      +++L+ + P+S+   +M+R  ++   + E C     
Sbjct: 47  GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFV-VNEVCEMKNC 105

Query: 518 TDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPHLILD 694
              I     + Q   + + + P GP+A F + N+   H + + K  G  +  + P L  D
Sbjct: 106 NKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNI---HTLAELKMSGNCLKGSRPILSFD 162

Query: 695 NFTTKTGERTA--NIMKHLFPVPK------PDSKRLITFANRDDYISFRHH-IYEKHGGP 847
               +  +      ++  +F  P+      P    + TF+  D+ I FR++ I E+    
Sbjct: 163 PAFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAA- 221

Query: 848 KSIDLKEVGPRFELRLYQIKRGT 916
               L E+GPRF L L +I +G+
Sbjct: 222 ----LVEIGPRFVLNLIKIFKGS 240



to top

>Q975H1:BRIX_SULTO Probable brix domain-containing ribosomal biogenesis protein -|
           Sulfolobus tokodaii
          Length = 183

 Score = 39.7 bits (91), Expect = 0.028
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +2

Query: 368 KILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHR 547
           +I+ T+SR+    +  F+ EL  VFPNS ++NRG Q + +I+          L+++   +
Sbjct: 14  EIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIK 73

Query: 548 GQP 556
           G P
Sbjct: 74  GNP 76



to top

>Q9HGL6:BRX1_SCHPO Ribosome biogenesis protein Brix homolog - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 295

 Score = 38.9 bits (89), Expect = 0.047
 Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 24/232 (10%)
 Frame = +2

Query: 293 LDDQDRAVPRSIIDDEY------------AGATLREPKILLTTSRNPSAPLTQFVKELKV 436
           L   +RA      D+EY            AG    + K+L+ +SR  +      + +L  
Sbjct: 7   LKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLVS 66

Query: 437 VFPNSQRMNR--GGQVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGL 610
           + P+S++ ++      + ++ E    +   ++      R +   L +   P GPT  F +
Sbjct: 67  MMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHV 126

Query: 611 LNVVTRHDIKDRKAMGKMSEAYPHLILDN-FTTKTGERTAN-IMKHLFPVPK------PD 766
            N+ T  ++        +  + P L  D  F T    +    +++  F +PK      P 
Sbjct: 127 ENLHTMDELN--MTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPF 184

Query: 767 SKRLITFANRDDYISFRHH-IYEKHGGPKS-IDLKEVGPRFELRLYQIKRGT 916
             R+ T    D  I FR++ I E     K  + L E+GPRF + +  I  G+
Sbjct: 185 IDRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGS 236



to top

>Q8TDN6:BXDC2_HUMAN Brix domain-containing protein 2 - Homo sapiens (Human)|
          Length = 353

 Score = 38.5 bits (88), Expect = 0.062
 Identities = 57/257 (22%), Positives = 111/257 (43%), Gaps = 17/257 (6%)
 Frame = +2

Query: 197 EKKRRVREALEEGKP----IPTXXXXXXXXXXXXIDLDDQDRAVPRSIIDDEYAGATLRE 364
           ++KRR   A++  KP    I              ++ +++DR +P  +   ++      +
Sbjct: 5   KRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDR-IPGPVCKGKWKN----K 59

Query: 365 PKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEITDLILV 535
            +IL+ +SR  +      +++L+++ P+S+   +M+R  ++   I E C        I  
Sbjct: 60  ERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNCNKCIYF 118

Query: 536 HEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPHLILDNFTTKT 712
              + Q   + + + P GP+A F + N+   H + + K  G  +  + P L  D    + 
Sbjct: 119 EAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFDPAFDEL 175

Query: 713 GERTA--NIMKHLFPVPK------PDSKRLITFANRDDYISFRH-HIYEKHGGPKSIDLK 865
                   ++  +F  P+      P    + TF   D+ I FR+  I E+        L 
Sbjct: 176 PHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA-----LV 230

Query: 866 EVGPRFELRLYQIKRGT 916
           E+GPRF L L +I +G+
Sbjct: 231 EIGPRFVLNLIKIFQGS 247



to top

>Q3SZZ0:BXDC2_BOVIN Brix domain-containing protein 2 - Bos taurus (Bovine)|
          Length = 353

 Score = 38.1 bits (87), Expect = 0.081
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
 Frame = +2

Query: 347 GATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEI 517
           G    + +IL+ +SR  +      +++L+++ P+S+   +M+R  ++   I E C     
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNC 112

Query: 518 TDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPHLILD 694
              I     + Q   + + + P GP+A F + N+   H + + K  G  +  + P L  D
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169

Query: 695 NFTTKTGERTA--NIMKHLFPVPK------PDSKRLITFANRDDYISFRH-HIYEKHGGP 847
               +         ++  +F  P+      P    + TF   D+ I FR+  I E+    
Sbjct: 170 PAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA- 228

Query: 848 KSIDLKEVGPRFELRLYQIKRGT 916
               L E+GPRF L L +I +G+
Sbjct: 229 ----LVEIGPRFVLNLIKIFQGS 247



to top

>Q6M0M3:BRIX_METMP Probable brix domain-containing ribosomal biogenesis protein -|
           Methanococcus maripaludis
          Length = 164

 Score = 37.7 bits (86), Expect = 0.11
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +2

Query: 371 ILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHRG 550
           +++TTSR PS      V +L  VF N + +NRG   +SE++E+       D+I+V E +G
Sbjct: 1   MIITTSRKPSQRTRSLVNDLARVF-NFKILNRGKIPLSELIEN-----KDDMIIVEELKG 54

Query: 551 QPDGL 565
            P  L
Sbjct: 55  NPGRL 59



to top

>Q5RAN2:BXDC2_PONPY Brix domain-containing protein 2 - Pongo pygmaeus (Orangutan)|
          Length = 353

 Score = 37.4 bits (85), Expect = 0.14
 Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 15/205 (7%)
 Frame = +2

Query: 347 GATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEI 517
           G    + +IL+ +SR  +      +++L+++ P+S+   +M+R  ++   I E C     
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNC 112

Query: 518 TDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGK-MSEAYPHLILD 694
              I     + Q   + + + P GP+A F + N+   H + + K  G  +  + P L  D
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169

Query: 695 NFTTKTGERTANIMKHLF----------PVPKPDSKRLITFANRDDYISFRH-HIYEKHG 841
               +       ++K L           P  +P    + TF   D+ I FR+  I E+  
Sbjct: 170 PAFDELPHYA--LLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDA 227

Query: 842 GPKSIDLKEVGPRFELRLYQIKRGT 916
                 L E+GPRF L L +I +G+
Sbjct: 228 A-----LVEIGPRFVLNLIKIFQGS 247



to top

>Q9UXB9:BRIX_SULSO Probable brix domain-containing ribosomal biogenesis protein -|
           Sulfolobus solfataricus
          Length = 170

 Score = 37.4 bits (85), Expect = 0.14
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +2

Query: 356 LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILV 535
           +   +I++T+SR+PS     F+  L  V P+S ++ RG +   EI E   +     L+ V
Sbjct: 3   IHRTRIVITSSRDPSIRTRNFLNVLTFVLPDSVKITRGKKSKIEIFERAINLGALYLLFV 62

Query: 536 HEHRGQPDGLIVCHLPLGPTAYF 604
               G P  +IV  L      YF
Sbjct: 63  LAKNGNPLRIIVYDLESLSIKYF 85



to top

>Q4QQT6:BXDC2_RAT Brix domain-containing protein 2 - Rattus norvegicus (Rat)|
          Length = 352

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 13/203 (6%)
 Frame = +2

Query: 347 GATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEI 517
           G    + +IL+ +SR  +      +++L+++ P+S+   +M+R  ++   I E C     
Sbjct: 53  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNC 111

Query: 518 TDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYPHLILDN 697
              I     + Q   + + + P GP+A F + N+   H + + K  G   +    L+  +
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 168

Query: 698 FTTKTGERTANIMKHLF---------PVPKPDSKRLITFANRDDYISFRH-HIYEKHGGP 847
                    A + + L          P  +P    + TF   D+ I FR+  I E+    
Sbjct: 169 PAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA- 227

Query: 848 KSIDLKEVGPRFELRLYQIKRGT 916
               L E+GPRF L L +I +G+
Sbjct: 228 ----LVEIGPRFVLNLIKIFQGS 246



to top

>Q9DCA5:BXDC2_MOUSE Brix domain-containing protein 2 - Mus musculus (Mouse)|
          Length = 353

 Score = 36.6 bits (83), Expect = 0.23
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 13/203 (6%)
 Frame = +2

Query: 347 GATLREPKILLTTSRNPSAPLTQFVKELKVVFPNSQ---RMNRGGQVISEIVESCRSHEI 517
           G    + +IL+ +SR  +      +++L+++ P+S+   +M+R  ++   I E C     
Sbjct: 54  GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFV-INEVCEMKNC 112

Query: 518 TDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYPHLILDN 697
              I     + Q   + + + P GP+A F + N+   H + + K  G   +    L+  +
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNI---HTLAELKMTGNCLKGSRPLLSFD 169

Query: 698 FTTKTGERTANIMKHLF---------PVPKPDSKRLITFANRDDYISFRH-HIYEKHGGP 847
                    A + + L          P  +P    + TF   D+ I FR+  I E+    
Sbjct: 170 PAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAA- 228

Query: 848 KSIDLKEVGPRFELRLYQIKRGT 916
               L E+GPRF L L +I +G+
Sbjct: 229 ----LVEIGPRFVLNLIKIFQGS 247



to top

>P34524:YM63_CAEEL Brix domain-containing protein K12H4.3 - Caenorhabditis elegans|
          Length = 352

 Score = 35.4 bits (80), Expect = 0.52
 Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
 Frame = +2

Query: 290 DLDDQDRAVPRSIIDDEYAGATL--REPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMN 463
           D DDQ    P+   ++    A L     ++L+  SR         +K++K + P+++  +
Sbjct: 40  DNDDQ----PKQATEETRKRAELWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDS 95

Query: 464 RGGQ-----VISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTR 628
           +  Q     V++EI E       T ++     + +   L + ++  GP+  F + NV   
Sbjct: 96  KLDQQKSLNVLNEIAEM---KNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNV--- 149

Query: 629 HDIKDRKAMGKMSEAY-PHLILDNFTTKTGERT---ANIMK-----HLFPVPKPDSKRLI 781
           H +K+ K  G    A  P L  D+   K  +     A +M+     H  P  +P    + 
Sbjct: 150 HTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVF 209

Query: 782 TFA-NRDDYISFRHHIYEKHGGPKSIDLKEVGPRFELRLYQIKRGTVD 922
            F+    D I FR+         +S+ L+EVGPRF L + ++  G+ +
Sbjct: 210 NFSVGEGDKIWFRNFQIVD----ESLQLQEVGPRFVLEMVRLFAGSFE 253



to top

>Q8ZVN2:BRIX_PYRAE Probable brix domain-containing ribosomal biogenesis protein -|
           Pyrobaculum aerophilum
          Length = 181

 Score = 35.4 bits (80), Expect = 0.52
 Identities = 18/67 (26%), Positives = 33/67 (49%)
 Frame = +2

Query: 368 KILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQVISEIVESCRSHEITDLILVHEHR 547
           K+++TTSR PS    + V +L    P + ++ RG +    ++E   +     +  + E R
Sbjct: 6   KVIITTSREPSKKTLELVNDLVNSLPGTSKIVRGKKSFITLLEEAVACGARYIAFIWERR 65

Query: 548 GQPDGLI 568
           G P  L+
Sbjct: 66  GMPFALL 72



to top

>Q97AH7:SYA_THEVO Alanyl-tRNA synthetase - Thermoplasma volcanium|
          Length = 876

 Score = 35.0 bits (79), Expect = 0.68
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
 Frame = +2

Query: 449 SQRMNRGGQVISEIVESCRSHEITDLILVHEHRG-QPDGLIVCHLPLG-----PTAYFGL 610
           S+   RG QVI +I+++ +S +I DL+L+++  G  PD +       G     P  +  +
Sbjct: 413 SELEKRGQQVIEKILKTKKSIDIDDLVLLYDSHGISPDVVAAMAAEKGLKVMIPPNFHAM 472

Query: 611 LNVVTRHDIKDRKAMGKMSEAYPHL 685
             V++RH+ K   A+ K ++ YP++
Sbjct: 473 --VISRHEKK--SALKKSAKVYPNI 493



to top

>Q08235:BRX1_YEAST Ribosome biogenesis protein BRX1 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 291

 Score = 33.9 bits (76), Expect = 1.5
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
 Frame = +2

Query: 356 LREPKILLTTSRNPSAPLTQFVKELKVVFPNSQR-----MNRGGQVISEIVESCRSHEIT 520
           + + + LL +SR  +      +++L  + P+S++       +  Q ++EI E    +   
Sbjct: 28  MNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAEL---YNCN 84

Query: 521 DLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVVTRHDIKDRKAMGKMSEAYPHLILDNF 700
           +++     + Q   L +   P GPT  F + N+ T  ++       K S   P L  D  
Sbjct: 85  NVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSR--PVLSFDQR 142

Query: 701 TTKTG--ERTANIMKHLFPVP------KPDSKRLITFANRDDYISFRHHIY--------E 832
              +   +    ++ H F VP      KP    +++F+  DD I  R +          E
Sbjct: 143 FESSPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEE 202

Query: 833 KHGGPKSIDLKEVGPRFELRLYQIKRGT 916
              G + I L E+GPRF + +  I  G+
Sbjct: 203 YEDGEEDISLVEIGPRFVMTVILILEGS 230



to top

>Q12153:SSF2_YEAST Ribosome biogenesis protein SSF2 - Saccharomyces cerevisiae|
           (Baker's yeast)
          Length = 453

 Score = 32.7 bits (73), Expect = 3.4
 Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 1/169 (0%)
 Frame = +2

Query: 446 NSQRMNRGGQVISEIVESC-RSHEITDLILVHEHRGQPDGLIVCHLPLGPTAYFGLLNVV 622
           N +R+ +    +S+ V +  R  +I+ LIL H+      G       +   A   ++ VV
Sbjct: 218 NLKRLYKAKNNLSKTVPNLHRKEDISSLILDHDL-----GAYTSESEIEDDA---IVRVV 269

Query: 623 TRHDIKDRKAMGKMSEAYPHLILDNFTTKTGERTANIMKHLFPVPKPDSKRLITFANRDD 802
              D+K + +   +S+  P  + DN   + G    ++       PKP      T      
Sbjct: 270 DNQDVKAKHSQTSLSQKTPVKMTDNEEREKGIEEEDVEME---EPKPSENSQPTPRK--- 323

Query: 803 YISFRHHIYEKHGGPKSIDLKEVGPRFELRLYQIKRGTVDQSEAQNEFV 949
                          K+I L E+GPR  L+L +I+ G        +EFV
Sbjct: 324 ---------------KAIKLTELGPRLTLKLVKIEDGICSGKVLHHEFV 357



to top

>Q9PTG6:DCTN2_CHICK Dynactin subunit 2 - Gallus gallus (Chicken)|
          Length = 402

 Score = 32.0 bits (71), Expect = 5.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 473 QVISEIVESCRSHEITDLILVHEHRGQPDGLIVCHLP--LGPTA 598
           Q+ S + ES    E+T + L  +  G    L+ CHL   LGPTA
Sbjct: 121 QIQSAVKESAAEEELTPMALARQLEGLKQQLVSCHLQKLLGPTA 164



to top

>Q7MAE6:ARGD_WOLSU Acetylornithine aminotransferase - Wolinella succinogenes|
          Length = 394

 Score = 32.0 bits (71), Expect = 5.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -1

Query: 925 LVHSSSFDLVEPQLKTGPNLLQVNGFGATVFFVDVMPERN 806
           L+H+S+   +EPQ +    L++++G+   VFF +   E N
Sbjct: 68  LIHTSNLYYIEPQARLAEKLVKLSGYDMRVFFANSGAEAN 107


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 216,132,925
Number of extensions: 4668300
Number of successful extensions: 11235
Number of sequences better than 10.0: 44
Number of HSP's gapped: 11168
Number of HSP's successfully gapped: 44
Length of query: 431
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 315
Effective length of database: 68,868,219
Effective search space: 21693488985
Effective search space used: 21693488985
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top