Clone Name | FLbaf99m13 |
---|---|
Clone Library Name | barley_pub |
>LOC_Os03g52130:12003.t04539:unspliced-genomic expressed protein| Length = 1344 Score = 93.2 bits (197), Expect(3) = 8e-44 Identities = 42/76 (55%), Positives = 50/76 (65%) Frame = +2 / +2 Query: 17 SKLISYPMAQPPGKLLDTIRRPVAAASSLHQSAANHLQPLLSLAQRNGVNRRCILTLLXX 196 +K+ MAQP GKL+DTIRRP AAS+ H+SA HLQPL LAQRNG++RR +LT L Sbjct: 44 TKITPTTMAQPQGKLVDTIRRPFTAASTFHRSATRHLQPLAMLAQRNGISRRGLLTFLTS 223 Query: 197 XXXXXXXXXXRKALLQ 244 RKALLQ Sbjct: 224 TAAIPEAGESRKALLQ 271 Score = 89.5 bits (189), Expect(3) = 8e-44 Identities = 34/46 (73%), Positives = 40/46 (86%) Frame = +2 / +1 Query: 290 ERLDDFYKRNYKDYFGFMEGSVREKPAEELTESEKGILAWLDKNK* 427 +RLDD+YKRNY+DYFG +EG R+K +ELTESEKGIL WLDKNK* Sbjct: 946 QRLDDYYKRNYRDYFGLIEGPARQKNEDELTESEKGILEWLDKNK* 1083 Score = 37.7 bits (76), Expect(3) = 8e-44 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = +2 / +3 Query: 245 DYVKRSKENKEKNDKERLD 301 +Y+K+SKENKEKNDKE D Sbjct: 372 EYLKKSKENKEKNDKEVCD 428 Score = 95.5 bits (202), Expect(3) = 8e-27 Identities = 44/77 (57%), Positives = 51/77 (66%) Frame = -3 / -3 Query: 241 Q*RLP*FTGLGYGCSRCQQSEDAPPVNSIPLSQAEQRLQMICR*LMKR*SCCDRPSDCVQ 62 Q* L *FT L YGCS ++SE APP N++PLSQ Q L+M C * MKR*SCC+ P DCV Sbjct: 268 Q*SLS*FTSLRYGCSGGEESEKAPPANAVPLSQHGQWLEMPCC*SMKR*SCCEWPPDCVH 89 Query: 61 QLTWRLSHGI*DEFALL 11 Q LSHG + LL Sbjct: 88 QFPLGLSHGSWSDLCLL 38 Score = 40.9 bits (83), Expect(3) = 8e-27 Identities = 25/52 (48%), Positives = 30/52 (57%) Frame = -3 / -1 Query: 454 GAVMLNTS*LLVLVKPRENSFXXXXXXXXXXLPNRAFHETEVILVIPLVKVV 299 G ++ + *L VLVKP ENSF L RA +T+VI VIPLV VV Sbjct: 1110 GMHIILSF*LFVLVKPFENSFLRLCKLIFILLSCRALDQTKVIPVIPLVVVV 955 Score = 26.3 bits (51), Expect(3) = 8e-27 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = -2 / -1 Query: 287 CHSSLCFPLTSSHNL 243 C S LCFPL SS L Sbjct: 414 CRSFLCFPLISSDTL 370 Score = 92.7 bits (196), Expect(2) = 3e-21 Identities = 42/78 (53%), Positives = 49/78 (62%) Frame = +3 / +3 Query: 15 RANSSHIPWLSLQVSCWTQSEGRSQQLHLFINQRQIICSRCSAWLRGMELTGGASSLCWH 194 + S +PWLS + + WTQS G SQQL FI+Q+Q I S WLRG L GGA SL Sbjct: 42 KQRSLQLPWLSPKGNWWTQSGGHSQQLQRFIDQQQGISSHWPCWLRGTALAGGAFSLSSP 221 Query: 195 RLQPYPRPVNQGRRYCKI 248 LQPY R VNQ R YCK+ Sbjct: 222 PLQPYLRLVNQERLYCKV 275 Score = 31.8 bits (63), Expect(2) = 3e-21 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = +1 / +3 Query: 376 AHGVGERNSRVA*QEQV 426 A+ VGERNSR+A*QEQ+ Sbjct: 1032 AYRVGERNSRMA*QEQI 1082 Score = 72.5 bits (152), Expect(2) = 2e-17 Identities = 37/70 (52%), Positives = 42/70 (60%) Frame = -2 / -2 Query: 245 LAIAPSLIHWPRVWLQPMPAE*GCTSC*LHSSEPSXXXXXXDLPLIDEEMKLLRPAF*LC 66 LA+ P LIH P+VWLQ +* SC* SSEP+ L LIDE +KLL A *LC Sbjct: 272 LAVEPFLIHQPQVWLQWR*GK*EGPSC*CRSSEPTWPVAGDALLLIDETLKLL*MAS*LC 93 Query: 65 PAAYLEAEPW 36 P L AEPW Sbjct: 92 PPVSLGAEPW 63 Score = 39.1 bits (79), Expect(2) = 2e-17 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = -1 / -2 Query: 432 ASYLFLSSHARIPFXXXXXXXXXXSLTEPSMKPK* 328 + YLFLSSH+RIPF L PS++PK* Sbjct: 1088 SDYLFLSSHSRIPFSDSVSSSSFFCLAGPSIRPK* 984 Score = 55.6 bits (115), Expect(3) = 3e-11 Identities = 25/40 (62%), Positives = 30/40 (75%) Frame = -1 / -1 Query: 243 CNSAFLDSLASGMAAADASRVRMHLLLTPFL*AKLSSGCR 124 C+ AFLDS ASGMAA + +VR LLL PFL*A ++SG R Sbjct: 270 CSRAFLDSPASGMAAVEVRKVRRPLLLMPFL*ANMASGWR 151 Score = 27.2 bits (53), Expect(3) = 3e-11 Identities = 10/13 (76%), Positives = 10/13 (76%) Frame = -2 / -3 Query: 431 LATCSCQATREFL 393 L CSCQA REFL Sbjct: 1087 LTICSCQAIREFL 1049 Score = 26.7 bits (52), Expect(3) = 3e-11 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -1 / -1 Query: 81 GLLIVSSSLPGG*AM 37 GLLIVS+S P G*AM Sbjct: 108 GLLIVSTSFPWG*AM 64 Score = 38.2 bits (77), Expect(2) = 5e-04 Identities = 19/35 (54%), Positives = 23/35 (65%) Frame = +1 / +1 Query: 142 LGSEEWS*QEVHPHSAGIGCSHTRGQ*IKEGAIAR 246 +GSEE *QE H + CSHT G *IK+G+ AR Sbjct: 169 VGSEERH*QEGPSHFPHLHCSHT*GW*IKKGSTAR 273 Score = 24.9 bits (48), Expect(2) = 5e-04 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +1 / +1 Query: 25 HLISHGSASR*AAGHNQ 75 H HGSA R GHNQ Sbjct: 52 HSNYHGSAPRETGGHNQ 102
>LOC_Os12g04270:12012.t00316:unspliced-genomic expressed protein| Length = 3493 Score = 34.5 bits (69), Expect = 0.75 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 / -2 Query: 189 WHRLQPYPRPVNQGRRYCKIM*RGQRKTKRRMTRRGWTTFTRGITRITSVSW 344 W + P P +G R+ *RG R +RR R GW+ R R + +W Sbjct: 159 WRAWKQRPAPGGRGGRWRWCY*RGARPWRRRARRSGWSEGYRRRGRRDASAW 4
>LOC_Os05g46760:12005.t04161:unspliced-genomic mitogen-activated protein kinase kinase kinase 1, putative,| expressed Length = 1419 Score = 34.5 bits (69), Expect = 0.75 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = +3 / -3 Query: 204 PYPRPVNQGRRYCKIM*RGQRKTKRRMTRRGWTTFTRGITR 326 P+PRP RR R +RR TRRG T T G TR Sbjct: 457 PWPRPPRTPRRRTPPSARRTSPPRRRATRRGRTRGTSGTTR 335
>LOC_Os04g22440:12004.t01974:unspliced-genomic hypothetical protein| Length = 549 Score = 34.1 bits (68), Expect = 1.0 Identities = 16/54 (29%), Positives = 22/54 (40%) Frame = +3 / +1 Query: 78 GRSQQLHLFINQRQIICSRCSAWLRGMELTGGASSLCWHRLQPYPRPVNQGRRY 239 G ++ H R ++ S CS + S CW R PY R QG+ Y Sbjct: 382 GAAKGTHRRAGTRIVVLSPCSVFSLPRASRSSCCSACWRRSFPYQRASYQGQIY 543
>LOC_Os02g09130:12002.t00760:unspliced-genomic palmitoyltransferase TIP1, putative, expressed| Length = 8353 Score = 33.1 bits (66), Expect = 2.0 Identities = 20/49 (40%), Positives = 23/49 (46%) Frame = +3 / +2 Query: 204 PYPRPVNQGRRYCKIM*RGQRKTKRRMTRRGWTTFTRGITRITSVSWKA 350 P PRP + RG+R +RRM RR TT TR TS S A Sbjct: 233 PPPRPPPSEAERSRARARGRRGRRRRMRRRSRTTCTRARRTGTSRSCTA 379
>LOC_Os01g06680:12001.t00551:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 5123 Score = 33.1 bits (66), Expect = 2.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 / +3 Query: 111 QRQIICSRCSAWLRGMELTGGASSLCWHRLQPYPRPVNQGRR 236 +R +C R + RG ++T SS CW R+ + V GRR Sbjct: 4317 RRSGVCGRSRSLQRGNDVTKRGSSSCWPRVPSHG*RVLSGRR 4442
>LOC_Os09g21820:12009.t01916:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4227 Score = 25.4 bits (49), Expect(2) = 2.6 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +2 / -2 Query: 119 NHLQPLLSLAQRNGVNRRCI 178 +HLQP + L + G RRC+ Sbjct: 305 SHLQPPVPLCRSVGFRRRCL 246 Score = 24.4 bits (47), Expect(2) = 2.6 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +3 / -1 Query: 15 RANSSHIPW 41 RANS H+PW Sbjct: 462 RANSGHLPW 436
>LOC_Os05g30430:12005.t02642:unspliced-genomic expressed protein| Length = 3536 Score = 32.7 bits (65), Expect = 2.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 / +3 Query: 129 SRCSAWLRGMELTGGASSLCWHRLQPYPRPVNQG 230 +R + W R + GA S WHR P RP +QG Sbjct: 108 ARTARWTRRRRRSRGAPSGHWHRSPPPRRPPSQG 209
>LOC_Os01g03050:12001.t00197:unspliced-genomic fruit protein PKIWI502, putative, expressed| Length = 2679 Score = 32.7 bits (65), Expect = 2.7 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = +3 / -1 Query: 213 RPVNQGRRYCKIM*RGQRKTKRRMTRRG 296 RP +GRR C+ RG+R RR TRRG Sbjct: 555 RPRIRGRRRCRRRGRGRRGAGRRGTRRG 472
>LOC_Os03g09160:12003.t00771:unspliced-genomic expressed protein| Length = 816 Score = 29.9 bits (59), Expect(2) = 3.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 / -3 Query: 210 PRPVNQGRRYCKIM*RGQRKTKRRMTRRGW 299 P P +GRR C+ G R+ R +RR W Sbjct: 166 PGPSGRGRRTCRAAGAGARRRGRAGSRRRW 77 Score = 21.7 bits (41), Expect(2) = 3.6 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 / -3 Query: 168 GGASSLCWHRLQPYPRPVNQGRR 236 G AS W R P P P GRR Sbjct: 667 GRASRRPWSRGAPSPPPWACGRR 599
>LOC_Os05g32500:12005.t02846:unspliced-genomic expressed protein| Length = 4445 Score = 32.2 bits (64), Expect = 3.7 Identities = 15/28 (53%), Positives = 19/28 (67%) Frame = +3 / +2 Query: 258 GQRKTKRRMTRRGWTTFTRGITRITSVS 341 G+R+ +RR RRG T TRG +R TS S Sbjct: 59 GRRRRRRRGARRGRTGGTRGRSRRTSTS 142
>LOC_Os04g35730:12004.t03243:unspliced-genomic serine/arginine repetitive matrix protein 1, putative| Length = 693 Score = 32.2 bits (64), Expect = 3.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 / +2 Query: 258 GQRKTKRRMTRRGWTTFTRGITRITSVSWK 347 G R+ +RR RR W T R + ITS W+ Sbjct: 509 GGRRRRRRRRRRWWWTTWRCLHPITSTQWR 598
>LOC_Os03g12460:12003.t01045:unspliced-genomic conserved oligomeric complex COG6 family protein, expressed| Length = 6681 Score = 32.2 bits (64), Expect = 3.7 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +3 / -3 Query: 102 FINQRQIICSRCSAWLRGMELTGGASSLCWHRLQPY 209 ++ Q+ IIC + S+W+ M + LC HR+ Y Sbjct: 4207 YLEQKNIICKQNSSWIF*MAKNSMSDLLCNHRIPRY 4100
>LOC_Os01g69990:12001.t06301:unspliced-genomic GYF domain containing protein, expressed| Length = 6356 Score = 32.2 bits (64), Expect = 3.7 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -2 / +2 Query: 290 PCHSSLCFPLTSSHNLAIAPSLIHWPRVWLQPM 192 PC P S+H L H PR++LQP+ Sbjct: 5291 PCQKGALIPC*SAHQANTVLQLRHCPRIYLQPL 5389
>LOC_Os01g40520:12001.t03576:unspliced-genomic hypothetical protein| Length = 741 Score = 32.2 bits (64), Expect = 3.7 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 / +2 Query: 228 GRRYCKIM*RGQRKTKRRMTRRGWTTFTR 314 GR C+ + RG+ + +R + RGW T TR Sbjct: 284 GRNRCR*VKRGEEERERESSARGWLTRTR 370
>LOC_Os01g11300:12001.t01002:unspliced-genomic cytochrome P450 monooxygenase CYP710A, putative, expressed| Length = 1670 Score = 26.3 bits (51), Expect(2) = 5.0 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +3 / -3 Query: 261 QRKTKRRMTRRGWTTFTRG 317 +R+ R RRGWTT +RG Sbjct: 486 RRRRGGRSRRRGWTTPSRG 430 Score = 22.6 bits (43), Expect(2) = 5.0 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +2 / -3 Query: 356 REKPAEELTESEKGILAW 409 RE+PA T S +G AW Sbjct: 369 REQPAFPRTRSGRGSCAW 316
>LOC_Os03g52900:12003.t04612:unspliced-genomic conserved hypothetical protein| Length = 4577 Score = 31.8 bits (63), Expect = 5.1 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 / +2 Query: 117 QIICSRCSAWLRGMELTGGASSLCWHRLQPYPR 215 +I CSR S W + +G S W RL +PR Sbjct: 809 KIFCSRVSPWFWRRKSSGWKGSRTWKRLVRWPR 907
>LOC_Os04g55490:12004.t05021:unspliced-genomic expressed protein| Length = 1123 Score = 31.3 bits (62), Expect = 7.0 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = +2 / -2 Query: 50 PGKLLDTIRRPVAAASSLHQSAANHLQPLL 139 P DT RRP+AAASS AA PLL Sbjct: 729 PSMAGDTPRRPMAAASSSRTMAARTRHPLL 640
>LOC_Os02g01730:12002.t00073:unspliced-genomic senescence-induced receptor-like serine/threonine-protein kinase| precursor, putative, expressed Length = 2428 Score = 31.3 bits (62), Expect = 7.0 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 / +3 Query: 116 PLIDEEMKLLRPAF*LCPAAYLEAEPWDM 30 P +E+ LLRPA L P+ E EPW + Sbjct: 252 PPPQQELPLLRPAAKLVPSTKEEGEPWKL 338
>LOC_Os09g35540:12009.t03032:unspliced-genomic expressed protein| Length = 1944 Score = 27.2 bits (53), Expect(2) = 7.8 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +3 / +2 Query: 117 QIICSRCSAWLRGMELTGGASSLCWHRLQPYPRPV 221 QI CSR AWL G+ +SS P P V Sbjct: 908 QIRCSRSMAWLCGLTCIKESSSANTTTCSPIPMTV 1012 Score = 24.4 bits (47), Expect(2) = 7.8 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = +3 / +2 Query: 36 PWLSLQVSCWT 68 PWL L VS WT Sbjct: 200 PWLGLIVSAWT 232
>LOC_Os12g04424:12012.t00331:unspliced-genomic strictosidine synthase 3 precursor, putative, expressed| Length = 5712 Score = 30.9 bits (61), Expect = 9.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 / -3 Query: 117 QIICSRCSAWLRGMELTGGASSLCWHRLQP 206 +++ SR + +G +LT SSL WH QP Sbjct: 5242 ELVASRLLSLAKGKKLTTQRSSLSWHEDQP 5153
>LOC_Os08g01550:12008.t00054:unspliced-genomic hypothetical protein| Length = 669 Score = 30.9 bits (61), Expect = 9.6 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 / +2 Query: 255 RGQRKTKRRMTRRGWTTFTRGITRITSVSWKA 350 R +R+ KRR RRGWT R T T +A Sbjct: 311 RRRRRRKRRRRRRGWTVSGRTSTTTTQPGRRA 406
>LOC_Os05g46520:12005.t04138:unspliced-genomic polygalacturonase precursor, putative, expressed| Length = 2490 Score = 30.9 bits (61), Expect = 9.6 Identities = 23/74 (31%), Positives = 30/74 (40%) Frame = +3 / +1 Query: 75 EGRSQQLHLFINQRQIICSRCSAWLRGMELTGGASSLCWHRLQPYPRPVNQGRRYCKIM* 254 +G Q L I S S L + G+S L HR PR V GRR + M Sbjct: 373 QGGDQALRTHTPPHTISASSISCALSTSLIASGSSDLRQHRRAGEPRRVAGGRRRRRRMA 552 Query: 255 RGQRKTKRRMTRRG 296 +R+ + RRG Sbjct: 553 PLRRRQRPDAERRG 594
>LOC_Os05g43050:12005.t03798:unspliced-genomic conserved hypothetical protein| Length = 1202 Score = 30.9 bits (61), Expect = 9.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 / +1 Query: 255 RGQRKTKRRMTRRGWTTFTRG 317 RG+ T RR T WTT TRG Sbjct: 778 RGRSSTTRRETTAAWTTSTRG 840
>LOC_Os05g35266:12005.t004767:unspliced-genomic beta-1,3-galactosyltransferase sqv-2, putative, expressed| Length = 3359 Score = 30.9 bits (61), Expect = 9.6 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = -3 / -3 Query: 196 RCQQSEDAPPVNSIPLSQAEQRLQMICR*LMKR*SCCDRPSDC 68 RC +S APP S P + A + C + SCC P C Sbjct: 1899 RCARSRTAPPPPSPPAAAASRPSAPTCPGASRAASCC*TPC*C 1771
>LOC_Os05g33200:12005.t02915:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 2886 Score = 30.9 bits (61), Expect = 9.6 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -3 / +3 Query: 499 IFLYKSCFSYFGGWRGAVMLNTS 431 IFL KSCF ++GG G VM S Sbjct: 1032 IFL*KSCFFFWGGGGGGVMKRVS 1100
>LOC_Os02g57980:12002.t05369:unspliced-genomic ATP-dependent RNA helicase dbp4, putative, expressed| Length = 4968 Score = 30.9 bits (61), Expect = 9.6 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 / -1 Query: 458 AWCCHAQH*LATCSCQATREFL 393 AW C QH L CS QA R+ L Sbjct: 4689 AWSCLFQHHLLNCSSQAMRDML 4624
>LOC_Os01g11160:12001.t00989:unspliced-genomic cationic amino acid transporter 4, putative, expressed| Length = 2295 Score = 30.9 bits (61), Expect = 9.6 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = +3 / -2 Query: 183 LCWHRLQPYPRPVNQGRRYCKIM*RGQRKTKRRMTRRGWTTFTRGITR 326 L W R +P P +GR + R +R++ RR RR W R +R Sbjct: 2021 LRWQRPRPPPSHRPRGRHQRRPPRRRRRRSTRRARRRRWRAARRARSR 1878
>LOC_Os05g25830:12005.t02238:unspliced-genomic conserved hypothetical protein| Length = 2743 Score = 30.9 bits (61), Expect = 9.6 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -1 / -1 Query: 519 RTSPPKEFSYTKAVSAILVVGVVLSCSTLASYLFLSSH 406 +T+P E SYT + L + + L CS + L +H Sbjct: 955 KTTPSPEISYTNNLHCWLTISLCLCCSLFSPVLIACAH 842
>LOC_Os01g64020:12001.t05770:unspliced-genomic transcription factor HBP-1b, putative, expressed| Length = 7365 Score = 30.9 bits (61), Expect = 9.6 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = -1 / +1 Query: 498 FSYTKAVSAILVVGVVLSCSTLASYL 421 FS ++++S LV+G V +CS++ SY+ Sbjct: 3490 FSLSRSLSLFLVLGHVFACSSIFSYM 3567 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 237,115,088 Number of extensions: 3239907 Number of successful extensions: 14392 Number of sequences better than 10.0: 30 Length of query: 224 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 176 Effective length of database: 52,912,542 Effective search space: 9312607392 Effective search space used: 9312607392 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)