>LOC_Os05g19974:12005.t004712:unspliced-genomic endonuclease/exonuclease/phosphatase family protein, putative,|
expressed
Length = 9520
Score = 191 bits (411), Expect(6) = e-175
Identities = 75/79 (94%), Positives = 77/79 (97%)
Frame = +2 / +1
Query: 902 FKGEKQGAVEFLKLVFRALCLCWDRQTQDLHIDWILFRGRPLVPALCEVINDNIDGVYPS 1081
F GEKQGA+EFLKL+FRALCLCWDRQTQDLHIDWILFRGRPLVPALCEVINDNIDGVYPS
Sbjct: 9082 FAGEKQGALEFLKLIFRALCLCWDRQTQDLHIDWILFRGRPLVPALCEVINDNIDGVYPS 9261
Query: 1082 SHFPIFAEFLLPRSVRLAE 1138
SHFPIFAEFLLPRSVRL E
Sbjct: 9262 SHFPIFAEFLLPRSVRLVE 9318
Score = 175 bits (376), Expect(6) = e-175
Identities = 71/79 (89%), Positives = 75/79 (94%)
Frame = +2 / +1
Query: 599 TFQLKRIEPPGFSFQIVNTNLDEDSPRARRRSALLTWQHIASLPPNLPVIYCGGFNTQKE 778
TFQLK++EPPGFSFQIVNTNLDEDSPRARRRSALLTWQHIASLPPNLPVIYCGGFNTQKE
Sbjct: 6190 TFQLKQVEPPGFSFQIVNTNLDEDSPRARRRSALLTWQHIASLPPNLPVIYCGGFNTQKE 6369
Query: 779 SMTGRFLLGRSREHGVVGD 835
SMTGRFLLGRSR + G+
Sbjct: 6370 SMTGRFLLGRSRYRLLEGE 6426
Score = 122 bits (262), Expect(6) = e-175
Identities = 50/54 (92%), Positives = 51/54 (94%)
Frame = +1 / +3
Query: 172 EGMASLSITVMTLNLHEGNQPSESPNSWEKRRDICVSVITSYSPTILCTQQGYE 333
EGM SLSITVMTLNLHEG QPSESPNSWE+RRDICVSVITSYSPTILCTQQG E
Sbjct: 249 EGMTSLSITVMTLNLHEGEQPSESPNSWERRRDICVSVITSYSPTILCTQQGEE 410
Score = 93.2 bits (197), Expect(6) = e-175
Identities = 35/36 (97%), Positives = 36/36 (100%)
Frame = +2 / +2
Query: 491 MKVELTEGGTFWLSESPSVPGSISWGATAPCIATWA 598
MKVELTEGGTFWLSESPSVPGS+SWGATAPCIATWA
Sbjct: 5984 MKVELTEGGTFWLSESPSVPGSVSWGATAPCIATWA 6091
Score = 87.2 bits (184), Expect(6) = e-175
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2 / +1
Query: 812 REHGVVGDMRDAWPNARVRKNVSLIHTYHGFKG 910
REHGVVGDMRDAWPNARVRKNVSLIHTYHGFKG
Sbjct: 7420 REHGVVGDMRDAWPNARVRKNVSLIHTYHGFKG 7518
Score = 70.3 bits (147), Expect(6) = e-175
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +1 / +1
Query: 316 TQQGYEQFGISRKGSQDTNDEYCTIFYEKEKV 411
T GYEQFGISRKGS+D DEYCTIFYEKEKV
Sbjct: 5803 TYTGYEQFGISRKGSEDNTDEYCTIFYEKEKV 5898
Score = 164 bits (353), Expect(6) = e-139
Identities = 70/87 (80%), Positives = 74/87 (85%)
Frame = -2 / -3
Query: 1167 KNKNNDYEGISARRTERGSKNSAKMGKCDDG*TPSILSFMTSHSAGTSGRPLNSIQSICK 988
K + G+S RRTERGSKNSA MGKC++G*TPSILSFMTS SAGTSGRPLNSIQSICK
Sbjct: 9347 KKNTQNDYGVSTRRTERGSKNSANMGKCEEG*TPSILSFMTSQSAGTSGRPLNSIQSICK 9168
Query: 987 S*VCLSQQRQRALNTNFRNSTAPCFSP 907
S*VC SQQRQ ALN NFRNS APCFSP
Sbjct: 9167 S*VCRSQQRQSALNINFRNSRAPCFSP 9087
Score = 132 bits (283), Expect(6) = e-139
Identities = 54/71 (76%), Positives = 58/71 (81%)
Frame = -1 / -2
Query: 814 PRSAKQKTSRHRFLLCVEAPTIDHRQIGWQRSYMLPRKQSTSSTSTRAIFIKICIYNLET 635
P S +QK HR LLCVE+ TIDH IGWQR YMLPR QSTSSTS+RAIFIK+CIYNLE
Sbjct: 6405 PGSTEQKPPSHRLLLCVESTTIDHW*IGWQRCYMLPR*QSTSSTSSRAIFIKVCIYNLEA 6226
Query: 634 EPRWFYSFELK 602
EPRWFY FELK
Sbjct: 6225 EPRWFYLFELK 6193
Score = 92.7 bits (196), Expect(6) = e-139
Identities = 39/52 (75%), Positives = 41/52 (78%)
Frame = -1 / -2
Query: 328 NLAGCRGWWGSNW**R*RRCRGASPSC*GSRSADSPHAGSESSP*WTGWPSP 173
+LAGCRGWWGS+W**R*RRCRGASPSC GSRS P G SSP* TG SP
Sbjct: 405 HLAGCRGWWGSSW**R*RRCRGASPSCWGSRSVAPPRVG*ASSP*LTG*SSP 250
Score = 86.3 bits (182), Expect(6) = e-139
Identities = 34/39 (87%), Positives = 37/39 (94%)
Frame = -2 / -2
Query: 603 NVAHVAMHGAVAPHEMLPGTDGDSDNQKVPPSVSSTFIK 487
++AHVAM GAVAPHE LPGT+GDSDNQKVPPSVSSTFIK
Sbjct: 6096 DIAHVAMQGAVAPHETLPGTEGDSDNQKVPPSVSSTFIK 5980
Score = 79.4 bits (167), Expect(6) = e-139
Identities = 32/33 (96%), Positives = 33/33 (100%)
Frame = -2 / -3
Query: 909 PLNP*YVCISETFLRTRAFGQASLISPTTPCSL 811
PLNP*YVC+SETFLRTRAFGQASLISPTTPCSL
Sbjct: 7517 PLNP*YVCMSETFLRTRAFGQASLISPTTPCSL 7419
Score = 62.9 bits (131), Expect(6) = e-139
Identities = 27/33 (81%), Positives = 30/33 (90%)
Frame = -3 / -3
Query: 410 TFSFS*NIVQYSSLVSCEPFLEMPNCS*PCWVQ 312
TFSFS*NIVQYSS++S EPFLE+PNCS*P VQ
Sbjct: 5897 TFSFS*NIVQYSSVLSSEPFLEIPNCS*PV*VQ 5799
Score = 126 bits (269), Expect(7) = e-101
Identities = 55/79 (69%), Positives = 58/79 (73%)
Frame = -2 / -3
Query: 834 SPTTPCSLDLPSKKRPVIDSFCVLKPPQ*ITGKLGGNEAICCHVXXXXXXXXXXXXXXRF 655
SP++ LDLPSK RPVIDSFCVL PPQ*ITGKLGGN+AICCHV RF
Sbjct: 6425 SPSSNLYLDLPSKNRPVIDSFCVLNPPQ*ITGKLGGNDAICCHVSKALRLRARGLSSSRF 6246
Query: 654 VFTIWKLNPGGSILLS*NV 598
VFTIWKLNPGGS LS*NV
Sbjct: 6245 VFTIWKLNPGGSTCLS*NV 6189
Score = 119 bits (254), Expect(7) = e-101
Identities = 56/80 (70%), Positives = 61/80 (76%)
Frame = -1 / -2
Query: 1138 LG*AN*AWK*KLSKDGKM**WVNTIYIVIYDFA*CRNQWASSKQYPVNMQVLSLSVPAET 959
L *A+ AWK K SK GKM* +NTI IVIYDF CRNQW SKQYPVNMQVLSLS+PAET
Sbjct: 9318 LH*ADGAWKQKFSKYGKM*RRINTINIVIYDFTECRNQWTPSKQYPVNMQVLSLSIPAET 9139
Query: 958 KSSEY*F*KFYCTLFFPFKS 899
K S+Y*F K TLF P K+
Sbjct: 9138 KCSKY*FQKL*GTLFLPCKA 9079
Score = 71.2 bits (149), Expect(7) = e-101
Identities = 28/37 (75%), Positives = 31/37 (83%)
Frame = -1 / -1
Query: 598 CPCSNAWCSCSP*NASWY*WRF**PEGATFCKLHLHQ 488
CPCSNA CSC P*NAS +* RF* P+G TFCKLHLH+
Sbjct: 6091 CPCSNAGCSCPP*NASRH*RRF*QPKGTTFCKLHLHK 5981
Score = 67.5 bits (141), Expect(7) = e-101
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = -3 / -1
Query: 908 L*IHDMCVSVKHFCAHEHLAKHLSYHQQHHV 816
L*IHD V VKHFC HEHLAKHLSYH QHHV
Sbjct: 7516 L*IHDTYV*VKHFCGHEHLAKHLSYHPQHHV 7424
Score = 48.3 bits (99), Expect(7) = e-101
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = -3 / -1
Query: 326 PCWVQRMVGE*LVMTLTQM 270
PCWVQRMVGE*LVMTLTQM
Sbjct: 403 PCWVQRMVGE*LVMTLTQM 347
Score = 46.4 bits (95), Expect(7) = e-101
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2 / -2
Query: 411 NLLFFVEYCAVFIIGVL*TFS*NAKLLIT 325
+L FF+EYC +FI +L* FS*N KLLIT
Sbjct: 5898 HLFFFIEYCTIFISVIL*AFS*NPKLLIT 5812
Score = 35.0 bits (70), Expect(7) = e-101
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2 / -3
Query: 234 RLIPLMQVQSHHRDGQAGHPL 172
RL+PL+ V+ HHR+ QA HPL
Sbjct: 311 RLLPLV*VERHHRN*QASHPL 249
Score = 126 bits (270), Expect(6) = e-101
Identities = 57/82 (69%), Positives = 64/82 (78%)
Frame = +3 / +2
Query: 894 IMDLKGKNKVQ*NF*N*YSELFVSAGTDKLRTCILTGYCLEDAHWFLHYAKS*MTI*MVF 1073
++ L+G+NKV *+F*N*Y E FVSAG D+LRTCILTGYCLE HWFLH KS*MTI MVF
Sbjct: 9074 VLALQGRNKVP*SF*N*YLEHFVSAGIDRLRTCILTGYCLEGVHWFLHSVKS*MTILMVF 9253
Query: 1074 THHHIFPSLLSFYFHAQFA*PR 1139
HIFP LL+F FHA A* R
Sbjct: 9254 ILLHIFPYLLNFCFHAPSA*WR 9319
Score = 120 bits (256), Expect(6) = e-101
Identities = 49/68 (72%), Positives = 55/68 (80%)
Frame = +1 / +3
Query: 598 NVSTQKNRTTWVQFPDCKYKS**R*PSCS*TKCFAYVAAYSFVATQFACDLLWGLQHTKG 777
++STQ +RTTWVQ PDCKYK **R*PS S*TKCFA VA YS VATQF DLLW +QHT+G
Sbjct: 6189 HISTQTSRTTWVQLPDCKYKP**R*PSSS*TKCFANVATYSIVATQFTSDLLWWIQHTEG 6368
Query: 778 IYDGTFFA 801
+YD FA
Sbjct: 6369 VYDWAVFA 6392
Score = 81.3 bits (171), Expect(6) = e-101
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +1 / +1
Query: 487 FDEGGAYRRWHLLVIRISISTRKHFMGSNCTMHCYMGNV 603
F EGGAYRRW+LLV+RIS S K FMG NCT+HCYMGN+
Sbjct: 5980 FYEGGAYRRWYLLVVRISFSAWKRFMGGNCTLHCYMGNI 6096
Score = 74.8 bits (157), Expect(6) = e-101
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1 / +3
Query: 817 TWCCW*YERCLAKCSCAQKCFTDTHISWI*R 909
TWCC *YERCLAKCSC QKCFT T++SWI*R
Sbjct: 7425 TWCCG*YERCLAKCSCPQKCFTHTYVSWI*R 7517
Score = 45.1 bits (92), Expect(6) = e-101
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +2 / +2
Query: 323 KVMSNLAFQEKVHRTPMMNTAQYSTKKRR 409
+VMSNL FQEK R +MN QYS KK+R
Sbjct: 5810 QVMSNLGFQEKAQRITLMNIVQYSMKKKR 5896
Score = 43.2 bits (88), Expect(6) = e-101
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3 / +2
Query: 174 GDGQPVHHGDDSEPA*GESAEREP*QLGE 260
GD PV++GDD++P G + EREP QLGE
Sbjct: 251 GDD*PVNYGDDAQPTRGGATEREPQQLGE 337
Score = 107 bits (229), Expect(6) = 1e-75
Identities = 50/69 (72%), Positives = 52/69 (75%)
Frame = -3 / -1
Query: 809 ICQAKNVPS*IPFVC*SPHNRSQANWVATKLYAAT*AKHFVYEHEGYLHQDLYLQSGN*T 630
I +AK S* P VC* HNRS NWVAT LY AT AKHFVYE EGYLHQ LYLQSG+*T
Sbjct: 6400 IYRAKTAQS*TPSVC*IHHNRSLVNWVATMLYVATLAKHFVYELEGYLHQGLYLQSGS*T 6221
Query: 629 QVVLFF*VE 603
QVVL *VE
Sbjct: 6220 QVVLLV*VE 6194
Score = 105 bits (224), Expect(6) = 1e-75
Identities = 51/82 (62%), Positives = 52/82 (63%)
Frame = -3 / -1
Query: 1151 TMKASRLGELSVEVKTQQRWENVMMGKHHLYCHL*LRIVQEPVGVL*TVSSQYASPEFVC 972
T+ S LG SVE K QQ WENV KHH YCHL*L VQEPV L*TVSSQYASPE V
Sbjct: 9331 TIMVSPLGGRSVEAKIQQIWENVKKDKHHQYCHL*LHRVQEPVDAL*TVSSQYASPESVD 9152
Query: 971 PSRDKXXXXXXXXXXLHLVFPL 906
PSRDK HLV PL
Sbjct: 9151 PSRDKVL*ILISETLGHLVSPL 9086
Score = 64.3 bits (134), Expect(6) = 1e-75
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = -1 / -2
Query: 907 FKSMICVYQ*NIFAHTSIWPSISHITNNTMF 815
FKSMI +Y+*NIFA TSIWPSISHIT+NTMF
Sbjct: 7515 FKSMIRMYE*NIFADTSIWPSISHITHNTMF 7423
Score = 50.6 bits (104), Expect(6) = 1e-75
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -3 / -3
Query: 599 LPM*QCMVQLLPMKCFLVLMEILITRRCHLL*A 501
LPM*QC VQL PMK F L EIL T+R HLL*A
Sbjct: 6092 LPM*QCRVQLPPMKRFQALKEILTTKRYHLL*A 5994
Score = 45.5 bits (93), Expect(6) = 1e-75
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = -1 / -1
Query: 409 PSLFRRILCSIHHWCPVNLFLKCQIAHNL 323
P LF RIL +IH P++LFLK QIAHNL
Sbjct: 5896 PFLFHRILYNIHQCYPLSLFLKSQIAHNL 5810
Score = 30.9 bits (61), Expect(6) = 1e-75
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3 / -1
Query: 218 CRFRVITVMDRLAIPS 171
CR VITV+DRL IPS
Sbjct: 295 CRLSVITVIDRLVIPS 248
Score = 104 bits (221), Expect(5) = 1e-69
Identities = 51/71 (71%), Positives = 55/71 (77%)
Frame = +3 / +2
Query: 603 FNSKE*NHLGSVSRL*IQILMKIALVLVDEVLCLRGSI*LRCHPICL*SIVGASTHKRNL 782
FNS +*NHLGS SRL*IQ LMKIAL LVDEVLC RG+I* RCHPI *SIV STH+R+L
Sbjct: 6194 FNSNK*NHLGSASRL*IQTLMKIALELVDEVLC*RGNI*HRCHPIYQ*SIVVDSTHRRSL 6373
Query: 783 *RDVFCLADLG 815
* FC D G
Sbjct: 6374 *LGGFCSVDPG 6406
Score = 98.2 bits (208), Expect(5) = 1e-69
Identities = 41/57 (71%), Positives = 45/57 (78%)
Frame = +1 / +3
Query: 970 GQTNSGLAY*LDTV*RTPTGSCTMRSHK*QYRWCLPIITFSHLC*VFTSTLSSPSRD 1140
G T+SGLAY*LDTV*R TGSCT+ SHK*QY WCL TFSH+C*+F STL PS D
Sbjct: 9150 GSTDSGLAY*LDTV*RASTGSCTL*SHK*QY*WCLSFFTFSHIC*IFASTLRPPSGD 9320
Score = 64.3 bits (134), Expect(5) = 1e-69
Identities = 28/36 (77%), Positives = 28/36 (77%)
Frame = +3 / +3
Query: 492 *RWSLQKVAPSGYQNLHQYQEAFHGEQLHHALLHGQ 599
*RWSLQKV P G QNL Q EAFHG QLH ALLHGQ
Sbjct: 5985 *RWSLQKVVPFGCQNLLQCLEAFHGGQLHPALLHGQ 6092
Score = 56.5 bits (117), Expect(5) = 1e-69
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +3 / +2
Query: 816 NMVLLVI*EMLGQMLVCAKMFH*YTHIMDLK 908
NMVL VI*EMLGQMLV AKMFH Y IMDLK
Sbjct: 7424 NMVLWVI*EMLGQMLVSAKMFHSYIRIMDLK 7516
Score = 39.6 bits (80), Expect(5) = 1e-69
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3 / +3
Query: 336 IWHFKKRFTGHQ**ILHNILRKREGFSF 419
IW FKKR G **IL+NIL KR+G +F
Sbjct: 5823 IWDFKKRLRG*H**ILYNIL*KRKGATF 5906
>LOC_Os04g30470:12004.t02733:unspliced-genomic U-box domain containing protein|
Length = 3166
Score = 25.4 bits (49), Expect(3) = 9.6
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -2 / +2
Query: 1185 RTRNGNKNKNNDYEGISARRTERGSKNSAKMGKCDDG*TPSILSFMTSHSAGTSGRPLNS 1006
R ++ + +A R R S +S + G+C S + S SAG + P S
Sbjct: 530 RPSRSSRGSRSSAPARAASRCPRSSSSSPRSGRCRRRAPTSSTAAPVSGSAGLARPPCRS 709
Query: 1005 IQS 997
S
Sbjct: 710 SSS 718
Score = 25.4 bits (49), Expect(3) = 9.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -1 / +1
Query: 391 ILCSIHHWCPVNLFLKCQIAHNLAGC 314
I CS H+ P+ L C L GC
Sbjct: 1096 IFCSFHNRNPLGLLEPCYAVSVLPGC 1173
Score = 23.5 bits (45), Expect(3) = 9.6
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1 / +3
Query: 631 PRWFYSFELKRC 596
P W+Y F K+C
Sbjct: 1059 P*WYYCFRFKKC 1094
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 581,259,395
Number of extensions: 9444513
Number of successful extensions: 41594
Number of sequences better than 10.0: 26
Length of query: 489
Length of database: 55,613,886
Length adjustment: 51
Effective length of query: 438
Effective length of database: 52,743,708
Effective search space: 23101744104
Effective search space used: 23101744104
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)