>LOC_Os12g02070:12012.t00104:unspliced-genomic expressed protein|
Length = 1014
Score = 125 bits (267), Expect(2) = 6e-45
Identities = 53/70 (75%), Positives = 62/70 (88%)
Frame = +3 / +3
Query: 183 TERAKKDALRSAARVAGHLVEAVDGGVQELFVNEKRIELEARALLGTIARYRKQSDQWLA 362
T+R K DA+RSAARVA LV VDGG QEL++NE+RIE+EARALL TIARY+KQ+DQWLA
Sbjct: 243 TDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALLATIARYKKQTDQWLA 422
Query: 363 ATNAVNSVLK 392
ATNA+NSVLK
Sbjct: 423 ATNAINSVLK 452
Score = 79.0 bits (166), Expect(2) = 6e-45
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = +3 / +2
Query: 384 VLKEIGDFENWMKIMDFDCKSINAAIRNIHRS*FC 488
+L+EIGD+ENWMKIMDFDCKSINAAIRNIH S* C
Sbjct: 746 LLQEIGDYENWMKIMDFDCKSINAAIRNIHHS*LC 850
Score = 59.7 bits (124), Expect(2) = 2e-18
Identities = 23/34 (67%), Positives = 28/34 (82%)
Frame = -1 / -3
Query: 491 RTKS*PMNVTNGCIYTFTVKIHDLHPVFKVSNFL 390
+ KS +NVT+ CIYTFTV+IHDLHPV +SNFL
Sbjct: 853 KAKSGVVNVTDSCIYTFTVEIHDLHPVLIISNFL 752
Score = 55.6 bits (115), Expect(2) = 2e-18
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = -1 / -2
Query: 392 LEDRVDRVGGGEPLVALLPVPRDGPE*RAGXXXXXXXXXXXXLHPAVDGLHEMTGDPRRA 213
L+DRVD VGGG+PLV+LL VP D + RAG L A++ HE +PRRA
Sbjct: 452 LQDRVDCVGGGKPLVSLLLVPCDCSKQRAGFNLYAPLVDVELLRSAINRGHEKICNPRRA 273
Query: 212 P 210
P
Sbjct: 272 P 270
Score = 55.1 bits (114), Expect(2) = 9e-14
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = -2 / -1
Query: 487 QNHDR*MLRMAAFILLQSKSMIFIQFSKSPIS 392
Q+ + *MLR+AAFILLQSKSMIFIQFS SPIS
Sbjct: 849 QSQEW*MLRIAAFILLQSKSMIFIQFS*SPIS 754
Score = 44.1 bits (90), Expect(2) = 9e-14
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -2 / -3
Query: 394 SLRTELTALVAASHWSLCFLY 332
+ +TEL ALVAASHWS+CFLY
Sbjct: 454 TFKTELIALVAASHWSVCFLY 392
Score = 49.6 bits (102), Expect(2) = 2e-11
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +2 / +1
Query: 392 GNWRL*KLDEDHGF*L*KYKC 454
GNWRL*+LDEDHGF L*KYKC
Sbjct: 754 GNWRL*ELDEDHGFRL*KYKC 816
Score = 41.8 bits (85), Expect(2) = 2e-11
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 290 HRARGPRATRDHRAVQEAERPVARRHQRGQLGPQG 394
HR PRA +R VQEA+ PVA RHQR QL +G
Sbjct: 350 HRD*SPRAACYNRTVQEAD*PVACRHQRNQLCLEG 454
Score = 49.6 bits (102), Expect = 3e-05
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 391 RKLETLKTG*RSWILTVKV*MQPFVTFIGHDF 486
RKLE ++TG*RSWI TVKV*MQ VTF DF
Sbjct: 753 RKLEIMRTG*RSWISTVKV*MQLSVTFTTPDF 848
Score = 42.8 bits (87), Expect = 0.003
Identities = 20/39 (51%), Positives = 24/39 (61%)
Frame = +1 / +2
Query: 556 ENWMKIIGCDCKGINVAICNIS*SL*CYKVSSPLDFFPS 672
ENWMKI+ DCK IN AI NI S C+++ DF S
Sbjct: 770 ENWMKIMDFDCKSINAAIRNIHHS*LCFRLWC*EDFIYS 886
Score = 34.1 bits (68), Expect(2) = 0.070
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3 / -3
Query: 618 NITDGYIDTFTVTTYDLHPV 559
N+TD I TFTV +DLHPV
Sbjct: 832 NVTDSCIYTFTVEIHDLHPV 773
Score = 24.4 bits (47), Expect(2) = 0.070
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / -1
Query: 357 ATGRSASCTAR 325
ATG+SASCT R
Sbjct: 417 ATGQSASCTVR 385
>LOC_Os11g02110:12011.t00106:unspliced-genomic GCN5-like protein, putative, expressed|
Length = 1247
Score = 122 bits (262), Expect(2) = 1e-44
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = +3 / +3
Query: 186 ERAKKDALRSAARVAGHLVEAVDGGVQELFVNEKRIELEARALLGTIARYRKQSDQWLAA 365
ER K DA++SAARVA LV VDGGVQEL++NE+RIE EARALL TIAR++KQ+DQWLAA
Sbjct: 333 ERVKVDAVKSAARVADLLVATVDGGVQELYINERRIEFEARALLATIARFKKQTDQWLAA 512
Query: 366 TNAVNSVLK 392
TNA+NSVLK
Sbjct: 513 TNAINSVLK 539
Score = 80.8 bits (170), Expect(2) = 1e-44
Identities = 31/35 (88%), Positives = 34/35 (97%)
Frame = +3 / +1
Query: 384 VLKEIGDFENWMKIMDFDCKSINAAIRNIHRS*FC 488
+L+EIGDFENWMKIMDFDCKSINAAIRNIH+S* C
Sbjct: 835 LLQEIGDFENWMKIMDFDCKSINAAIRNIHQS*LC 939
Score = 61.1 bits (127), Expect(2) = 5e-18
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -2 / -1
Query: 487 QNHDR*MLRMAAFILLQSKSMIFIQFSKSPIS 392
Q+ D *MLR+AAFILLQSKSMIFIQFSKSPIS
Sbjct: 938 QSQDW*MLRIAAFILLQSKSMIFIQFSKSPIS 843
Score = 52.8 bits (109), Expect(2) = 5e-18
Identities = 28/60 (46%), Positives = 34/60 (56%)
Frame = -1 / -1
Query: 392 LEDRVDRVGGGEPLVALLPVPRDGPE*RAGXXXXXXXXXXXXLHPAVDGLHEMTGDPRRA 213
L+DRVD VGG +PLV+LL PRD + RAG LH V+ HE +PRRA
Sbjct: 539 LQDRVDCVGGSKPLVSLLLEPRDCSKQRAGFKLYAPLVDVELLHSTVNRGHEKICNPRRA 360
Score = 61.1 bits (127), Expect(2) = 2e-14
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -1 / -3
Query: 473 MNVTNGCIYTFTVKIHDLHPVFKVSNFL 390
+NVT+ CIYTFTV+IHDLHPV K+SNFL
Sbjct: 924 VNVTDSCIYTFTVEIHDLHPVLKISNFL 841
Score = 40.9 bits (83), Expect(2) = 2e-14
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -2 / -2
Query: 394 SLRTELTALVAASHWSLCFL 335
+ +TEL ALVAASHWS+CFL
Sbjct: 541 TFKTELIALVAASHWSVCFL 482
Score = 48.7 bits (100), Expect(2) = 8e-11
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = +1 / +2
Query: 391 RKLETLKTG*RSWILTVKV*MQPFVTFIGHD 483
RKLE L+TG*RSWI TVKV*MQ VTF D
Sbjct: 842 RKLEILRTG*RSWISTVKV*MQLSVTFTNPD 934
Score = 40.9 bits (83), Expect(2) = 8e-11
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 290 HRARGPRATRDHRAVQEAERPVARRHQRGQLGPQG 394
HR PRA +RAVQEA+ PVA HQR QL +G
Sbjct: 437 HRV*SPRAACYNRAVQEAD*PVACCHQRNQLCLEG 541
Score = 47.8 bits (98), Expect = 9e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 392 GNWRL*KLDEDHGF*L*KYKC 454
GNWR *+LDEDHGF L*KYKC
Sbjct: 843 GNWRF*ELDEDHGFRL*KYKC 905
Score = 41.8 bits (85), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 556 ENWMKIIGCDCKGINVAICNIS*SL*CYKV 645
ENWMKI+ DCK IN AI NI S C+++
Sbjct: 859 ENWMKIMDFDCKSINAAIRNIHQS*LCFRL 948
Score = 34.5 bits (69), Expect = 0.90
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / -3
Query: 624 LRNITDGYIDTFTVTTYDLHPV 559
L N+TD I TFTV +DLHPV
Sbjct: 927 LVNVTDSCIYTFTVEIHDLHPV 862
>LOC_Os12g22760:12012.t004194:unspliced-genomic expressed protein|
Length = 6572
Score = 123 bits (264), Expect(2) = 1e-43
Identities = 54/66 (81%), Positives = 59/66 (89%)
Frame = +3 / +3
Query: 183 TERAKKDALRSAARVAGHLVEAVDGGVQELFVNEKRIELEARALLGTIARYRKQSDQWLA 362
TERAK DA+RSAARVA LV VDGGVQEL++NEKRIELEARALL TIA YRKQ+DQWLA
Sbjct: 1152 TERAKMDAVRSAARVADLLVATVDGGVQELYINEKRIELEARALLATIAWYRKQTDQWLA 1331
Query: 363 ATNAVN 380
ATNA+N
Sbjct: 1332 ATNAIN 1349
Score = 78.5 bits (165), Expect(2) = 1e-43
Identities = 31/35 (88%), Positives = 33/35 (94%)
Frame = +3 / +2
Query: 384 VLKEIGDFENWMKIMDFDCKSINAAIRNIHRS*FC 488
+L EIGDFENWMKIMDFDCKSINAAIRNIH+S* C
Sbjct: 1634 ML*EIGDFENWMKIMDFDCKSINAAIRNIHQS*LC 1738
Score = 58.3 bits (121), Expect(2) = 4e-17
Identities = 27/29 (93%), Positives = 28/29 (96%)
Frame = -2 / -3
Query: 478 DR*MLRMAAFILLQSKSMIFIQFSKSPIS 392
D *MLR+AAFILLQSKSMIFIQFSKSPIS
Sbjct: 1728 DW*MLRIAAFILLQSKSMIFIQFSKSPIS 1642
Score = 55.1 bits (114), Expect(2) = 4e-17
Identities = 27/57 (47%), Positives = 33/57 (57%)
Frame = -1 / -1
Query: 380 VDRVGGGEPLVALLPVPRDGPE*RAGXXXXXXXXXXXXLHPAVDGLHEMTGDPRRAP 210
VD +GG +PLV+LLPVPRD + RAG LH AV+ HE +PRR P
Sbjct: 1349 VDCIGGSKPLVSLLPVPRDCSKKRAGFKLYALLVDVELLHSAVNRGHEKICNPRRTP 1179
Score = 57.4 bits (119), Expect(2) = 4e-12
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -1 / -2
Query: 473 MNVTNGCIYTFTVKIHDLHPVFKVSNFL 390
+NVT+ IYTFTVKIHDLHPV K+SNFL
Sbjct: 1723 VNVTDSRIYTFTVKIHDLHPVLKISNFL 1640
Score = 39.1 bits (79), Expect(2) = 4e-12
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -2 / -2
Query: 382 ELTALVAASHWSLCFLY 332
+L ALVAASHWS+CFLY
Sbjct: 1351 QLIALVAASHWSVCFLY 1301
Score = 50.1 bits (103), Expect(2) = 2e-09
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +2 / +1
Query: 392 GNWRL*KLDEDHGF*L*KYKC 454
GNWR *+LDEDHGF*L*KYKC
Sbjct: 1642 GNWRF*ELDEDHGF*L*KYKC 1704
Score = 36.8 bits (74), Expect(2) = 2e-09
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2 / +2
Query: 290 HRARGPRATRDHRAVQEAERPVARRHQRGQL 382
HRA PRA+ +R VQEA+ PVA HQ QL
Sbjct: 1259 HRA*SPRASCYNRVVQEAD*PVACCHQCNQL 1351
Score = 48.3 bits (99), Expect = 7e-05
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +1 / +3
Query: 391 RKLETLKTG*RSWILTVKV*MQPFVTF 471
RKLE L+TG*RSWILTVKV*M+ VTF
Sbjct: 1641 RKLEILRTG*RSWILTVKV*MRLSVTF 1721
Score = 39.1 bits (79), Expect = 0.038
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1 / +2
Query: 556 ENWMKIIGCDCKGINVAICNI 618
ENWMKI+ DCK IN AI NI
Sbjct: 1658 ENWMKIMDFDCKSINAAIRNI 1720
Score = 34.5 bits (69), Expect(2) = 0.28
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3 / -2
Query: 624 LRNITDGYIDTFTVTTYDLHPV 559
L N+TD I TFTV +DLHPV
Sbjct: 1726 LVNVTDSRIYTFTVKIHDLHPV 1661
Score = 24.4 bits (47), Expect(2) = 0.28
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 357 ATGRSASCTAR 325
ATG+SASCT R
Sbjct: 1326 ATGQSASCTTR 1294
>LOC_Os04g54740:12004.t04946:unspliced-genomic expressed protein|
Length = 3943
Score = 70.7 bits (148), Expect(2) = 7e-13
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = +3 / +1
Query: 384 VLKEIGDFENWMKIMDFDCKSINAAIRNIHRS* 482
+L+EIGDFENWMKIMDFDCKSINAAI NI++S*
Sbjct: 3685 MLQEIGDFENWMKIMDFDCKSINAAIPNIYQS* 3783
Score = 27.6 bits (54), Expect(2) = 7e-13
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 324 IARYRKQSDQWLAA 365
+ +YRK++DQWLA+
Sbjct: 3360 LLKYRKETDQWLAS 3401
Score = 60.6 bits (126), Expect(2) = 2e-09
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -1 / -2
Query: 473 MNVTNGCIYTFTVKIHDLHPVFKVSNFL 390
+NV +GCIYTFT+KIHDLHPV ++SNFL
Sbjct: 3774 VNVRDGCIYTFTIKIHDLHPVLEISNFL 3691
Score = 25.8 bits (50), Expect(2) = 2e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2 / -1
Query: 415 QFSKSPISLRTELTALVAASHWSLCFLY 332
+ K ++L+ + ASHWS+ FLY
Sbjct: 3451 KLKKRRVNLQD*VDCFGDASHWSVSFLY 3368
Score = 57.4 bits (119), Expect = 1e-07
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = -2 / -3
Query: 484 NHDR*MLRMAAFILLQSKSMIFIQFSKSPIS 392
+ D *ML MAAFILLQSKSMIFIQFSKSPIS
Sbjct: 3785 SQDW*MLGMAAFILLQSKSMIFIQFSKSPIS 3693
Score = 48.7 bits (100), Expect = 5e-05
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +1 / +2
Query: 391 RKLETLKTG*RSWILTVKV*MQPFVTFIGHD 483
RKLE +TG*RSWIL VKV*MQP +TF D
Sbjct: 3692 RKLEISRTG*RSWILIVKV*MQPSLTFTNLD 3784
Score = 47.8 bits (98), Expect = 9e-05
Identities = 18/21 (85%), Positives = 19/21 (90%)
Frame = +2 / +3
Query: 392 GNWRL*KLDEDHGF*L*KYKC 454
GNWR +LDEDHGF*L*KYKC
Sbjct: 3693 GNWRFRELDEDHGF*L*KYKC 3755
Score = 39.1 bits (79), Expect = 0.038
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +1 / +1
Query: 556 ENWMKIIGCDCKGINVAICNI 618
ENWMKI+ DCK IN AI NI
Sbjct: 3709 ENWMKIMDFDCKSINAAIPNI 3771
Score = 35.0 bits (70), Expect = 0.66
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3 / +3
Query: 555 RKLDEDHRL*L*RYQCSH 608
R+LDEDH *L*+Y+CSH
Sbjct: 3708 RELDEDHGF*L*KYKCSH 3761
Score = 34.1 bits (68), Expect = 1.2
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3 / -2
Query: 624 LRNITDGYIDTFTVTTYDLHPV 559
L N+ DG I TFT+ +DLHPV
Sbjct: 3777 LVNVRDGCIYTFTIKIHDLHPV 3712
>LOC_Os02g36830:12002.t03320:unspliced-genomic cytokinin-O-glucosyltransferase 2, putative|
Length = 3234
Score = 31.3 bits (62), Expect = 8.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2 / +2
Query: 296 ARGPRATRDHRAVQEAERPVARRHQR 373
ARGPR RD + V+ A ARRH R
Sbjct: 797 ARGPRGRRDPQHVRRAGAAGARRHAR 874
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 182,999,144
Number of extensions: 2250330
Number of successful extensions: 9270
Number of sequences better than 10.0: 15
Length of query: 259
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 210
Effective length of database: 52,856,264
Effective search space: 11099815440
Effective search space used: 11099815440
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)