ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf87n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001060641.1| Oryza sativa (japonica cultivar-group) Os04g... 42 4.5
2gb|DQ822975.1| Glycine max MYB transcription factor MYB157 (MYB1... 42 4.5
3gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 4.5
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.5
5gb|AY332272.2| Tenebrio molitor cathepsin-L-like midgut cysteine... 42 4.5
6emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 42 4.5
7emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4,... 42 4.5
8emb|AJ428571.1|AEV428571 Azoarcus evansii partial padR gene, pad... 42 4.5
9gb|DQ074472.1| Malus x domestica MYB24 mRNA, complete cds 42 4.5
10dbj|AP004912.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 4.5
11gb|AY110253.1| Zea mays CL871_1 mRNA sequence 42 4.5

>ref|NM_001060641.1| Oryza sativa (japonica cultivar-group) Os04g0653300 (Os04g0653300)
           mRNA, complete cds
          Length = 438
 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 470 accgcgggcgtggtgacgccggtca 494
           ||||||||||||||| |||||||||
Sbjct: 148 accgcgggcgtggtgccgccggtca 172



to top

>gb|DQ822975.1| Glycine max MYB transcription factor MYB157 (MYB157) mRNA, partial
           cds
          Length = 393

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 98  cttcttctggtgaccatggtc 118
           |||||||||||||||||||||
Sbjct: 120 cttcttctggtgaccatggtc 100



to top

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 300     tccggcttgcgcaccagcgcg 320
               |||||||||||||||||||||
Sbjct: 3550283 tccggcttgcgcaccagcgcg 3550263



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 470      accgcgggcgtggtgacgccggtca 494
                ||||||||||||||| |||||||||
Sbjct: 33359353 accgcgggcgtggtgccgccggtca 33359377



to top

>gb|AY332272.2| Tenebrio molitor cathepsin-L-like midgut cysteine proteinase mRNA,
            complete cds
          Length = 1421

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 992  tggatcctcaagaactcctgg 1012
            |||||||||||||||||||||
Sbjct: 1216 tggatcctcaagaactcctgg 1236



to top

>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
              complete sequence
          Length = 151506

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 470    accgcgggcgtggtgacgccggtca 494
              ||||||||||||||| |||||||||
Sbjct: 131614 accgcgggcgtggtgccgccggtca 131638



to top

>emb|AL606446.1|OSJN00016 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16,
            complete sequence
          Length = 119535

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 470  accgcgggcgtggtgacgccggtca 494
            ||||||||||||||| |||||||||
Sbjct: 5232 accgcgggcgtggtgccgccggtca 5256



to top

>emb|AJ428571.1|AEV428571 Azoarcus evansii partial padR gene, padA gene, padB gene, padC gene,
            padD gene, padE gene, padF gene, padG gene, padH gene,
            padI gene, padJ gene, ORFA, ORFB and ORFC
          Length = 16922

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 310  gcaccagcgcggccccggcaa 330
            |||||||||||||||||||||
Sbjct: 5895 gcaccagcgcggccccggcaa 5875



to top

>gb|DQ074472.1| Malus x domestica MYB24 mRNA, complete cds
          Length = 1369

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 98  cttcttctggtgaccatggtc 118
           |||||||||||||||||||||
Sbjct: 168 cttcttctggtgaccatggtc 148



to top

>dbj|AP004912.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L19, TM0070,
             complete sequence
          Length = 128164

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 98    cttcttctggtgaccatggtc 118
             |||||||||||||||||||||
Sbjct: 36061 cttcttctggtgaccatggtc 36041



to top

>gb|AY110253.1| Zea mays CL871_1 mRNA sequence
          Length = 1396

 Score = 42.1 bits (21), Expect = 4.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 992  tggatcctcaagaactcctgg 1012
            |||||||||||||||||||||
Sbjct: 1058 tggatcctcaagaactcctgg 1078


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 168,163,813
Number of extensions: 8579822
Number of successful extensions: 158552
Number of sequences better than 10.0: 11
Number of HSP's gapped: 158552
Number of HSP's successfully gapped: 11
Length of query: 1197
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1174
Effective length of database: 18,503,978,556
Effective search space: 21723670824744
Effective search space used: 21723670824744
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top