ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf89a16 |
|---|---|
| Clone Library Name | barley_pub |
>Q9DCA5:BXDC2_MOUSE Brix domain-containing protein 2 - Mus musculus (Mouse)| Length = 353 Score = 258 bits (659), Expect = 4e-68 Identities = 139/275 (50%), Positives = 183/275 (66%), Gaps = 1/275 (0%) Frame = +1 Query: 280 AKKRKRSS-DATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKEKVLIT 456 AKK KRSS DA PA K D A E E +D P K + ++NKE++LI Sbjct: 16 AKKPKRSSKDAGQPA---KQADVAKEAEEEN----RDRIPGPVCKGK---WKNKERILIF 65 Query: 457 CSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQK 636 SR I +R RHLMQ++ L+PH+K D+K++ K K +NE+ E+++C+ C++FE +K++ Sbjct: 66 SSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQ 124 Query: 637 DLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLLKEM 816 DLY+W+ SP GPS KFLV +HT+ ELK+TGN LKGSRPLL+F FD PH+ LLKE Sbjct: 125 DLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEF 184 Query: 817 ITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMTLVE 996 + QIF+TP+ H K++PF DHVF F+I+D+ IWFRN+QI + LVE Sbjct: 185 LIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-------------EDAALVE 231 Query: 997 VGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 +GPRF LN IKIF GSFGGPTL+ENP Y SPN R Sbjct: 232 IGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266
>Q3SZZ0:BXDC2_BOVIN Brix domain-containing protein 2 - Bos taurus (Bovine)| Length = 353 Score = 258 bits (659), Expect = 4e-68 Identities = 133/278 (47%), Positives = 183/278 (65%), Gaps = 4/278 (1%) Frame = +1 Query: 280 AKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPF----FRNKEKV 447 A KRKR A K D + P + +++A E + GP ++NKE++ Sbjct: 3 ATKRKRRGGLAVQAKKLKRDAKDGKLPAKANDVSEEAAEEEKDRIPGPVCKGKWKNKERI 62 Query: 448 LITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECR 627 LI SR I +R RHLMQ++ L+PH+K D+K++ K K +NE+ E+++C+ C++FE + Sbjct: 63 LIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAK 121 Query: 628 KQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLL 807 K++DLY+W+ SP GPS KFLV +HT+ ELK+TGN LKGSRPLL+F FD+ PH+ LL Sbjct: 122 KKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALL 181 Query: 808 KEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMT 987 KE++ QIF+TP+ H K++PF DHVF F+I+D+ IWFRN+QI + Sbjct: 182 KELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-------------EDAA 228 Query: 988 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN R Sbjct: 229 LVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266
>Q8TDN6:BXDC2_HUMAN Brix domain-containing protein 2 - Homo sapiens (Human)| Length = 353 Score = 256 bits (655), Expect = 1e-67 Identities = 132/278 (47%), Positives = 182/278 (65%), Gaps = 4/278 (1%) Frame = +1 Query: 280 AKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPF----FRNKEKV 447 A KRKR A K ++ E P + ++ E + GP ++NKE++ Sbjct: 3 ATKRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERI 62 Query: 448 LITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECR 627 LI SR I +R RHLMQ++ L+PH+K D+K++ K K +NE+ E+++C+ C++FE + Sbjct: 63 LIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAK 121 Query: 628 KQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLL 807 K++DLY+W+ SP GPS KFLV +HT+ ELK+TGN LKGSRPLL+F FD+ PH+ LL Sbjct: 122 KKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALL 181 Query: 808 KEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMT 987 KE++ QIF+TP+ H K++PF DHVF F+I+D+ IWFRN+QI + Sbjct: 182 KELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-------------EDAA 228 Query: 988 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN R Sbjct: 229 LVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266
>Q4QQT6:BXDC2_RAT Brix domain-containing protein 2 - Rattus norvegicus (Rat)| Length = 352 Score = 256 bits (653), Expect = 2e-67 Identities = 135/273 (49%), Positives = 179/273 (65%) Frame = +1 Query: 283 KKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKEKVLITCS 462 K +K DA PA K D A E E KD P K + ++NKE++LI S Sbjct: 18 KPKKNRKDAGQPA---KQADVAKEAEEE-----KDRIPGPVCKGK---WKNKERILIFSS 66 Query: 463 RRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQKDL 642 R I +R RHLMQ++ L+PH+K D+K++ K K +NE+ E+++C+ C++FE +K++DL Sbjct: 67 RGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAKKKQDL 125 Query: 643 YLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLLKEMIT 822 Y+W+ SP GPS KFLV +HT+ ELK+TGN LKGSRPLL+F FD PH+ LLKE + Sbjct: 126 YMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLI 185 Query: 823 QIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMTLVEVG 1002 QIF+TP+ H K++PF DHVF F+I+D+ IWFRN+QI + LVE+G Sbjct: 186 QIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-------------EDAALVEIG 232 Query: 1003 PRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 PRF LN IKIF GSFGGPTL+ENP Y SPN R Sbjct: 233 PRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 265
>Q5RAN2:BXDC2_PONPY Brix domain-containing protein 2 - Pongo pygmaeus (Orangutan)| Length = 353 Score = 255 bits (651), Expect = 4e-67 Identities = 131/278 (47%), Positives = 181/278 (65%), Gaps = 4/278 (1%) Frame = +1 Query: 280 AKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPF----FRNKEKV 447 A KRKR A K ++ E P + ++ E + GP ++NKE++ Sbjct: 3 ATKRKRRGGFAVQAKKPKRNEKDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERI 62 Query: 448 LITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECR 627 LI SR I +R RHLMQ++ L+PH+K D+K++ K K +NE+ E+++C+ C++FE + Sbjct: 63 LIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNCNKCIYFEAK 121 Query: 628 KQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLL 807 K++DLY+W+ SP GPS KFLV +HT+ ELK+TGN LKGSRPLL+F FD+ PH+ LL Sbjct: 122 KKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALL 181 Query: 808 KEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMT 987 KE++ QI +TP+ H K++PF DHVF F+I+D+ IWFRN+QI + Sbjct: 182 KELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-------------EDAA 228 Query: 988 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 LVE+GPRF LN IKIF GSFGGPTL+ENP Y SPN R Sbjct: 229 LVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHR 266
>Q8UVY2:BXDC2_XENLA Brix domain-containing protein 2 - Xenopus laevis (African clawed| frog) Length = 339 Score = 251 bits (642), Expect = 4e-66 Identities = 128/276 (46%), Positives = 180/276 (65%) Frame = +1 Query: 280 AKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKEKVLITC 459 A KRKR S +K + G + P S+ + ++NKE+VLI Sbjct: 3 AYKRKRGSLPEVATNTKKAKKQLAGSEQEATAGEEFIVPPPVSEGK---WKNKERVLIFS 59 Query: 460 SRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQKD 639 SR I +R RHLMQ++ SL+PH++ ++K++ K K +NE+ E+++C+ C++FE +K++D Sbjct: 60 SRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNCNKCIYFEAKKKQD 118 Query: 640 LYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLLKEMI 819 LY+W+ SP GPS KFLV +HT+ ELK++GN LKGSRP+L+F FD++P + LLKE++ Sbjct: 119 LYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELL 178 Query: 820 TQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMTLVEV 999 TQIF TP+ H +++PF DH+F FSI D+ IWFRNYQI + LVE+ Sbjct: 179 TQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIE-------------EDAALVEI 225 Query: 1000 GPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIRAL 1107 GPRF LN IKIF GSFGGPTL+ENP Y SPN R + Sbjct: 226 GPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRM 261
>Q08235:BRX1_YEAST Ribosome biogenesis protein BRX1 - Saccharomyces cerevisiae (Baker's| yeast) Length = 291 Score = 236 bits (603), Expect = 1e-61 Identities = 113/227 (49%), Positives = 162/227 (71%), Gaps = 1/227 (0%) Frame = +1 Query: 427 FRNKEKVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSS 606 F NK++ L+ SR + YR+RHL+Q++ LLPH++K+ K+++K+ LNE+ EL +C++ Sbjct: 27 FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 85 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 LFFE RK +DLYLW+ K P GP++KF + +HTM+EL TGN LKGSRP+L+F F+ Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145 Query: 787 QPHWKLLKEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVD- 963 PH++L+KE++ F P + RK+KPF DHV FSIVDD IW R Y+IS H+ +K + Sbjct: 146 SPHYQLIKELLVHNFCVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEY 203 Query: 964 KGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIRA 1104 + G + ++LVE+GPRF + I I GSFGGP ++EN YVSPN +RA Sbjct: 204 EDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRA 250
>Q9VZE6:BXDC2_DROME Brix domain-containing protein 2 homolog - Drosophila melanogaster| (Fruit fly) Length = 359 Score = 223 bits (569), Expect = 1e-57 Identities = 119/278 (42%), Positives = 177/278 (63%), Gaps = 3/278 (1%) Frame = +1 Query: 277 MAKKRKRSSDATAPAAIEKP-DDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKEKVLI 453 M +K + AP P D++ P P+R+ D + A K++ + NK++VL+ Sbjct: 1 MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSS---DDVVPKKARKEK---WVNKQRVLV 54 Query: 454 TCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQ 633 +R I +R RHLM+++ +L+PH + +SK+E ++ S +NE+ E++ C+ + FE R++ Sbjct: 55 FSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTL-SVVNEMCEMKHCNKAMLFEGRRK 113 Query: 634 KDLYLWM--VKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLL 807 +DLY+W+ GPS KFL+ +HTM ELK+TGN L+GSRPLL+F S FD+ PH KLL Sbjct: 114 RDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLL 173 Query: 808 KEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLDKMT 987 KE+ Q ++ P H K++PF DHVF F+ +D IWFRN+QI + GGL Sbjct: 174 KELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQI--------LSEDGGLS--- 222 Query: 988 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 EVGPR+ +NP+KIF GSF G T++ENP YVSP++ R Sbjct: 223 --EVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQR 258
>Q9HGL6:BRX1_SCHPO Ribosome biogenesis protein Brix homolog - Schizosaccharomyces pombe| (Fission yeast) Length = 295 Score = 223 bits (567), Expect = 2e-57 Identities = 113/233 (48%), Positives = 158/233 (67%) Frame = +1 Query: 406 SKDEGPFFRNKEKVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELV 585 +K F K+KVL+ SR + YR RHL+ ++VS++PH+KKDSK++SK + LNEL Sbjct: 32 NKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELA 90 Query: 586 ELRSCSSCLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLT 765 EL +C++ FFE R+++DLYL + ++P GP+VKF V +HTM+EL +TGN LKGSRP+L+ Sbjct: 91 ELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILS 150 Query: 766 FSSNFDQQPHWKLLKEMITQIFATPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHN 945 F FD PH K++KE++ Q F PK R++KPF D V +I D IWFRNY+I N Sbjct: 151 FDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIR--EN 208 Query: 946 EIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIRA 1104 E DK D +TL+E+GPRF + I I GSFGGP +++N +VS +RA Sbjct: 209 E-DK----SKDPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRA 256
>P34524:YM63_CAEEL Brix domain-containing protein K12H4.3 - Caenorhabditis elegans| Length = 352 Score = 221 bits (563), Expect = 6e-57 Identities = 119/272 (43%), Positives = 175/272 (64%), Gaps = 17/272 (6%) Frame = +1 Query: 337 DDSAPERPERTLFGFKDSAAEPAS----KDEGP------------FFRNKEKVLITCSRR 468 ++SA ++ E G KDS+++ +S D+ P + N+E+VL+ CSR Sbjct: 13 EESAHQKMEWEAAGAKDSSSDDSSDESDNDDQPKQATEETRKRAELWTNRERVLVLCSRG 72 Query: 469 IIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQKDLYL 648 R R+LM+++ LLPHAK DSK++ ++S + LNE+ E+++C+ ++FE RK+KD YL Sbjct: 73 ADVRTRYLMKDIKDLLPHAKGDSKLDQQKSL-NVLNEIAEMKNCTKVMYFESRKRKDTYL 131 Query: 649 WMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWKLLKEMITQI 828 WM GPS+KFLV+ VHTM+ELK++GN L+ SRP+L+F FD++P KL+K ++ Q Sbjct: 132 WMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFDKKPQLKLIKAVLMQT 191 Query: 829 FATPKDHRKAKPFHDHVFVFSIVD-DHIWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGP 1005 TP H +++PF DHVF FS+ + D IWFRN+QI VD + + L EVGP Sbjct: 192 LGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQI---------VD----ESLQLQEVGP 238 Query: 1006 RFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 1101 RF L +++F GSF G L++NP YVSPN IR Sbjct: 239 RFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIR 270
>Q8AVP1:RPF1_XENLA Ribosome production factor 1 - Xenopus laevis (African clawed frog)| Length = 343 Score = 45.1 bits (105), Expect = 7e-04 Identities = 66/273 (24%), Positives = 111/273 (40%), Gaps = 16/273 (5%) Frame = +1 Query: 277 MAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEG-----PFFRNKE 441 + KKRK+ +A A KP E D A E + DE P+F + Sbjct: 75 LRKKRKKEREALGDKAPPKPVPKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQT 134 Query: 442 --KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVEL---RSCSS 606 K+LIT S R R + + S++P++ + +G AL +++ R + Sbjct: 135 TPKILITTSDRPRGRSVRFTEQLSSIIPNS------DVYYRRGLALKKIIPQCVSRDYTD 188 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 L ++ L + P GP+ F ++ V +E+K G +P + +NF Sbjct: 189 LLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVIL-NNFTT 247 Query: 787 QPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNE 948 + L I ++FA+ H R+ FH+ D+I+FR H Sbjct: 248 R-----LGHSIGRMFASLYPHDPHFVGRQVATFHNQ-------RDYIFFRY------HRY 289 Query: 949 IDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 + K +K K+ + E+GPRF L + G+F Sbjct: 290 LFKSEK----KVGIQELGPRFTLKLRSLQKGTF 318
>Q7TND5:RPF1_MOUSE Ribosome production factor 1 - Mus musculus (Mouse)| Length = 349 Score = 45.1 bits (105), Expect = 7e-04 Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 12/273 (4%) Frame = +1 Query: 265 ASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKE- 441 A + K+R+ D P + K D+ E T+ + A + DE + N++ Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQT 140 Query: 442 --KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVE---LRSCSS 606 K+LIT S R R L + + +++P DS V + +G AL +++ R + Sbjct: 141 SPKILITTSDRPHGRTVRLCEQLSTVIP----DSHVYYR--RGLALKKIIPQCIARDFTD 194 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 + ++ L + P GP+ F +++V +E+K G P + +NF Sbjct: 195 LIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIIL-NNFTT 253 Query: 787 QPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNE 948 + L I ++FA+ H R+ FH+ D+I+FR H Sbjct: 254 R-----LGHSIGRMFASLFPHNPQFIGRQVATFHNQ-------RDYIFFRF------HRY 295 Query: 949 IDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 I K +K K+ + E+GPRF L + G+F Sbjct: 296 IFKSEK----KVGIQELGPRFTLKLRSLQKGTF 324
>Q5RJS9:RPF1_RAT Ribosome production factor 1 - Rattus norvegicus (Rat)| Length = 345 Score = 43.9 bits (102), Expect = 0.002 Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 12/273 (4%) Frame = +1 Query: 265 ASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKE- 441 A + ++R+ D P + K D+ E T+ + A + DE + N++ Sbjct: 81 AKKKLKREREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQT 140 Query: 442 --KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVE---LRSCSS 606 K+LIT S R R L + + +++P DS V + +G AL +++ R + Sbjct: 141 SPKILITTSDRPHGRTVRLCEQLSTVIP----DSHVYYR--RGLALKKIIPQCIARDFTD 194 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 + ++ L + P GP+ F +++V +E+K G P + +NF Sbjct: 195 LIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIIL-NNFTT 253 Query: 787 QPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNE 948 + L I ++FA+ H R+ FH+ D+I+FR H Sbjct: 254 R-----LGHSIGRMFASLFPHNPQFIGRQVATFHNQ-------RDYIFFRF------HRY 295 Query: 949 IDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 I K +K K+ + E+GPRF L + G+F Sbjct: 296 IFKSEK----KVGIQELGPRFTLKLRSLQKGTF 324
>Q5R631:RPF1_PONPY Ribosome production factor 1 - Pongo pygmaeus (Orangutan)| Length = 349 Score = 43.5 bits (101), Expect = 0.002 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 12/273 (4%) Frame = +1 Query: 265 ASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKE- 441 A + K+R+ D P + K D+ E T+ + A + DE + NK+ Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQT 140 Query: 442 --KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVE---LRSCSS 606 K+LIT S R R L + + +++P++ + +G AL +++ R + Sbjct: 141 SPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR------RGLALKKIIPQCIARDFTD 194 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 + ++ L + P GP+ F +++V +E+K G P + +NF Sbjct: 195 LIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIIL-NNFTT 253 Query: 787 QPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNE 948 + L I ++FA+ H R+ FH+ D+I+FR H Sbjct: 254 R-----LGHSIGRMFASLFPHNPQFIGRQVATFHNQ-------RDYIFFRF------HRY 295 Query: 949 IDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 I + +K K+ + E+GPRF L + G+F Sbjct: 296 IFRSEK----KVGIQELGPRFTLKLRSLQKGTF 324
>Q9H9Y2:RPF1_HUMAN Ribosome production factor 1 - Homo sapiens (Human)| Length = 349 Score = 43.5 bits (101), Expect = 0.002 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 12/273 (4%) Frame = +1 Query: 265 ASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNKE- 441 A + K+R+ D P + K D+ E T+ + A + DE + NK+ Sbjct: 81 AKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQT 140 Query: 442 --KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVE---LRSCSS 606 K+LIT S R R L + + +++P++ + +G AL +++ R + Sbjct: 141 SPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYR------RGLALKKIIPQCIARDFTD 194 Query: 607 CLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQ 786 + ++ L + P GP+ F +++V +E+K G P + +NF Sbjct: 195 LIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIIL-NNFTT 253 Query: 787 QPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNE 948 + L I ++FA+ H R+ FH+ D+I+FR H Sbjct: 254 R-----LGHSIGRMFASLFPHNPQFIGRQVATFHNQ-------RDYIFFRF------HRY 295 Query: 949 IDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 I + +K K+ + E+GPRF L + G+F Sbjct: 296 IFRSEK----KVGIQELGPRFTLKLRSLQKGTF 324
>Q6IQU6:RPF1_DANRE Ribosome production factor 1 - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 330 Score = 41.2 bits (95), Expect = 0.011 Identities = 66/277 (23%), Positives = 107/277 (38%), Gaps = 22/277 (7%) Frame = +1 Query: 283 KKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKDEGPFFRNK---EKVLI 453 K+RK D P + K ++ E T+ + A DE + N+ KVLI Sbjct: 68 KERKALDDKAPPKEVPKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLI 127 Query: 454 TCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFECRKQ 633 T S R R + +++PHA + +G AL +++ +C + Sbjct: 128 TTSDRPRGRTVRFCDQLATVIPHAYVYYR------RGLALKKVIP----------QCISR 171 Query: 634 KDLYLWMVKS-------------PAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSS 774 YL ++ P GP+ F V++V +E+K G + P + + Sbjct: 172 GFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVIL-N 230 Query: 775 NFDQQPHWKLLKEMITQIFATPKDH------RKAKPFHDHVFVFSIVDDHIWFRNYQISV 936 NF + L I ++FA H R+ FH+ D I+FR Sbjct: 231 NFTTR-----LGHSIGRLFAALFPHDPQFVGRQVATFHNQ-------RDFIFFRF----- 273 Query: 937 PHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 H I K +K K+ + E+GPRF L + G+F Sbjct: 274 -HRYIFKNEK----KVGIQELGPRFTLKLRSLQKGTF 305
>Q9VKB4:RPF1_DROME Probable ribosome production factor 1 - Drosophila melanogaster| (Fruit fly) Length = 394 Score = 36.2 bits (82), Expect = 0.34 Identities = 58/267 (21%), Positives = 108/267 (40%), Gaps = 8/267 (2%) Frame = +1 Query: 283 KKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASKD------EGPFFRNKE- 441 ++R+ A PA +S E+ + + DS E K+ F R+ E Sbjct: 126 QERRARRKAGVPANPGHTIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEP 185 Query: 442 KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFE 621 KVLIT + + + R + + P+A + +S K + + E + + Sbjct: 186 KVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKK---ICKSAEREEFTDVVIVN 242 Query: 622 CRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDQQPHWK 801 ++K L ++ P GP+ F ++ V ++K + RP + + NF + Sbjct: 243 EDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILN-NFTTRLGLT 301 Query: 802 LLKEMITQIFATPKDH-RKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNEIDKVDKGGLD 978 + + + P+ R+A FH+ D+I+FR+++ E K K Sbjct: 302 VGRMLGALFHHDPEFRGRRAVTFHNQ-------RDYIFFRHHRY-----EFTKEGK---- 345 Query: 979 KMTLVEVGPRFCLNPIKIFGGSFGGPT 1059 ++ L E+GPRF L + G+F T Sbjct: 346 RVKLRELGPRFTLKLRSLQEGTFDSKT 372
>P54073:YUY1_CAEEL Brix domain-containing protein F44G4.1 - Caenorhabditis elegans| Length = 384 Score = 33.9 bits (76), Expect = 1.7 Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 16/287 (5%) Frame = +1 Query: 235 KILPLSAEAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERP-----------ERTLFGF 381 K LP S A +K KR+ ++ +SAP++ + T+ Sbjct: 94 KHLPKSQRGKALKRALRKDKRARQGERAQIRDELGESAPQKEVPKTIESMREYDATMVNE 153 Query: 382 KDSAAE--PASKDEGPFFRNKE--KVLITCSRRIIYRYRHLMQNVVSLLPHAKKDSKVES 549 +D E A+ + P+F + KV+IT + + + +P+++ ++ Sbjct: 154 EDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTR--- 210 Query: 550 KQSKGSALNELVELRSCSSCLFFECRKQKDLYLWMVKSPAGPSVKFLVNAVHTMEELKLT 729 K + E + R + L ++K + P GP+ F +N++ ++LK Sbjct: 211 KNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKF 270 Query: 730 GNHLKGSRPLLTFSSNFDQQPHWKLLKEMITQIFATPK-DHRKAKPFHDHVFVFSIVDDH 906 G ++ +NF+ + + + + PK R+ FH+ D+ Sbjct: 271 GESTSHFPEVIL--NNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQ-------RDY 321 Query: 907 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF 1047 I+FR+++ + K G K L+E+GPRF L + G+F Sbjct: 322 IFFRHHRY--------EFKKEG-SKAALLELGPRFTLRLKWLQKGTF 359
>O83209:Y179_TREPA Uncharacterized protein TP_0179 - Treponema pallidum| Length = 627 Score = 32.0 bits (71), Expect = 6.4 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = +1 Query: 250 SAEAPASHAMAKKRKRSSDATAPAAIEKPDDSAPERPERTLFGFKDSAAEPASK 411 S E A HA+ SS+ P AIE P S RP + G + A P SK Sbjct: 530 SLEFSAPHAIETAASESSEVATPVAIESPPQSEAARPAQ---GDSANLAPPLSK 580
>Q60B77:KSGA_METCA Dimethyladenosine transferase - Methylococcus capsulatus| Length = 257 Score = 32.0 bits (71), Expect = 6.4 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 11/130 (8%) Frame = +1 Query: 490 LMQNVVSLLPHAKKDSKVESKQSKGSALNELVELRSCSSCLFFE-----CRKQKDLYLWM 654 ++Q +V+ + A D VE +G EL++ +C + + K++ + Sbjct: 19 VIQEIVAAVGPAPSDRLVEIGPGEGVLTRELLQSGACLEAIELDRDLVAALKRRFAGVGR 78 Query: 655 VKSPAGPSVKFLVNAVHTMEELKLTGN-HLKGSRPLLTFSSNFDQ-----QPHWKLLKEM 816 ++ G ++KF + + T E L++ GN S PLL FDQ H+ L KE+ Sbjct: 79 LRIHEGDAMKFDLRTIATGERLRVVGNLPYNISTPLLFHL--FDQIDVIEDMHFMLQKEV 136 Query: 817 ITQIFATPKD 846 + ++ A D Sbjct: 137 VDRLCAGAGD 146
>Q9UI33:SCNBA_HUMAN Sodium channel protein type 11 subunit alpha - Homo sapiens (Human)| Length = 1791 Score = 31.6 bits (70), Expect = 8.4 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 274 AMAKKRKRSSDATAPAAIEKPD-DSAPERPERTLFGF--KDSAAEPASKDEGPFFRNKEK 444 A+ K++K+S D T +P D R L+G ++ +P +D PF+RN + Sbjct: 32 AIQKEKKKSKDQTGEVPQPRPQLDLKASRKLPKLYGDIPRELIGKPL-EDLDPFYRNHKT 90 Query: 445 VLITCSRRIIYRY 483 ++ +R IYR+ Sbjct: 91 FMVLNRKRTIYRF 103
>Q4FP12:RS16_PELUB 30S ribosomal protein S16 - Pelagibacter ubique| Length = 177 Score = 31.6 bits (70), Expect = 8.4 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +1 Query: 241 LPLSAEAPASHAMAKKRKRSSDATAPAAIEKPDDS-APERPERTLFGFKDSAAEPASKDE 417 +P + P+ K+RK+ D APAA K + + A E P+ + + A A K+E Sbjct: 84 MPANGSNPSKAIPKKERKKEGDEAAPAAAPKAEAAPAAEAPKEEAPKAEAAPAAEAPKEE 143 Query: 418 GP 423 P Sbjct: 144 AP 145 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 224,482,320 Number of extensions: 4628606 Number of successful extensions: 12216 Number of sequences better than 10.0: 22 Number of HSP's gapped: 12177 Number of HSP's successfully gapped: 22 Length of query: 469 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 352 Effective length of database: 68,593,924 Effective search space: 24145061248 Effective search space used: 24145061248 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
